RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 MSI1O43347 362 aaKnown RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 SPRY1O43609 319 aaPredicted RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 TM7SF2O76062 418 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 CPNE6O95741 557 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 GPR89BP0CG08 455 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 SLC2A4P14672 509 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 KRT9P35527 623 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 HSPA9P38646 679 aaKnown RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 TSPAN7P41732 249 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 PRCPP42785 496 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 METAP1P53582 386 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 GSCP56915 257 aaPredicted RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 KIAA1024LP59773 190 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 RPS13P62277 151 aaKnown RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 PPP2R2BQ00005 443 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 DEUP1Q05D60 604 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 NSUN2Q08J23 767 aaKnown RBP eCLIP3.83□□□□□ -1.8
USP54-217ENST00000498213 Q0VFX4 171 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 SEMA5AQ13591 1074 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 PDE1CQ14123 709 aaPredicted RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 NFATC4Q14934 902 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 KPNB1Q14974 876 aaKnown RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 PARP15Q460N3 678 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 ACCSLQ4AC99 568 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 TMEM52BQ4KMG9 183 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 CBWD6Q4V339 395 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 CBWD3Q5JTY5 395 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 CBWD5Q5RIA9 395 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 MANEALQ5VSG8 457 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 RAP1GAP2Q684P5 730 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 ERAP2Q6P179 960 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 DUS1LQ6P1R4 473 aaKnown RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 STRADAQ7RTN6 431 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 BNIPLQ7Z465 357 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 PTAR1Q7Z6K3 402 aaPredicted RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 TECPR1Q7Z6L1 1165 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 C17orf82Q86X59 251 aaPredicted RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 KRT73Q86Y46 540 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 LRRC49Q8IUZ0 686 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 PSTKQ8IV42 348 aaKnown RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 LIX1LQ8IVB5 337 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 APCDD1Q8J025 514 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 IQCKQ8N0W5 287 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 TMEM35BQ8NCS4 154 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 WFDC11Q8NEX6 87 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 OR2AP1Q8NGE2 309 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 MBD3L2Q8NHZ7 208 aaPredicted RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 UBA3Q8TBC4 463 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 WFDC5Q8TCV5 224 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 ZNF398Q8TD17 642 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 SHC3Q92529 594 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 ARHGEF2Q92974 986 aaKnown RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 SMARCE1Q969G3 411 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 NTAN1Q96AB6 310 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 PNPLA2Q96AD5 504 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 SH3KBP1Q96B97 665 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 BMFQ96LC9 184 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 NPY6RQ99463 290 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 KLF6Q99612 283 aaPredicted RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 CTRCQ99895 268 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 EDEM3Q9BZQ6 932 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 XPO4Q9C0E2 1151 aaKnown RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 TWSG1Q9GZX9 223 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 SYNCQ9H7C4 482 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 SLC39A1Q9NY26 324 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.83□□□□□ -1.8
USP54-217ENST00000498213 PDP2Q9P2J9 529 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 VPS51Q9UID3 782 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 PILRAQ9UKJ1 303 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 MYH10P35580 1976 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 TDRD6O60522 2096 aaKnown RBP3.83□□□□□ -1.8
USP54-217ENST00000498213 AKAP6Q13023 2319 aa3.83□□□□□ -1.8
USP54-217ENST00000498213 HIVEP2P31629 2446 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 A0A1B0GUH1 482 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 GOLGA6L7A0A1B0GV03 622 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 ARGFXA6NJG6 315 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 A6NL46 340 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 C16orf96A6NNT2 1141 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 TULP2O00295 520 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 CACNB4O00305 520 aaPredicted RBP3.82□□□□□ -1.8
USP54-217ENST00000498213 INPP4BO15327 924 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 CCNT2O60583 730 aaKnown RBP3.82□□□□□ -1.8
USP54-217ENST00000498213 DPM1O60762 260 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 ZMPSTE24O75844 475 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 WDR47O94967 919 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 IGSF6O95976 241 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 PAK4O96013 591 aaPredicted RBP3.82□□□□□ -1.8
USP54-217ENST00000498213 TNFP01375 233 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 MT-ND3P03897 115 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 CD63P08962 238 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 CCDC172P0C7W6 258 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 CTSEP14091 401 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 TRIM23P36406 574 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 PTPN9P43378 593 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 SGSHP51688 502 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 CCNHP51946 323 aaPredicted RBP3.82□□□□□ -1.8
USP54-217ENST00000498213 NDUFA8P51970 172 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 DGKQP52824 942 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 HSF1Q00613 529 aa3.82□□□□□ -1.8
USP54-217ENST00000498213 GNA12Q03113 381 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms