RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 APOA4P06727 396 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 AOAHP28039 575 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 HADHBP55084 474 aaKnown RBP15.5■□□□□ 0.07
VIM-208ENST00000497849 MINDY4Q4G0A6 757 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 TTC23LQ6PF05 361 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 TAOK1Q7L7X3 1001 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 PAQR7Q86WK9 346 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 PRIMA1Q86XR5 153 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 KATNAL2Q8IYT4 538 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 KRT222Q8N1A0 295 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 ACTL9Q8TC94 416 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 SEC16BQ96JE7 1060 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 PLCD4Q9BRC7 762 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 SLC24A3Q9HC58 644 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 C19orf25Q9UFG5 118 aaPredicted RBP15.5■□□□□ 0.07
VIM-208ENST00000497849 RUVBL2Q9Y230 463 aaKnown RBP15.5■□□□□ 0.07
VIM-208ENST00000497849 L3MBTL1Q9Y468 752 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 SCN3AQ9NY46 2000 aa15.5■□□□□ 0.07
VIM-208ENST00000497849 FAM237BA0A1B0GVD1 139 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 USP27XA6NNY8 438 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 KIAA1324LA8MWY0 1029 aaPredicted RBP15.49■□□□□ 0.07
VIM-208ENST00000497849 VPS26AO75436 327 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 CYC1P08574 325 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 CMPK1P30085 196 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 DLX5P56178 289 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 FAM53BQ14153 422 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 SEMA3AQ14563 771 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 EXT1Q16394 746 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 EMC4Q5J8M3 183 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 RCOR2Q8IZ40 523 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 CLYBLQ8N0X4 340 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 C17orf53Q8N3J3 647 aaPredicted RBP15.49■□□□□ 0.07
VIM-208ENST00000497849 SLC5A8Q8N695 610 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 OR13J1Q8NGT2 312 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 TP63Q9H3D4 680 aaPredicted RBP15.49■□□□□ 0.07
VIM-208ENST00000497849 TTC7AQ9ULT0 858 aaPredicted RBP15.49■□□□□ 0.07
VIM-208ENST00000497849 CAPN6Q9Y6Q1 641 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 COL6A5A8TX70 2615 aa15.49■□□□□ 0.07
VIM-208ENST00000497849 ESPNB1AK53 854 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 F8W8V4 182 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 PHF2O75151 1096 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 GOT2P00505 430 aaKnown RBP15.48■□□□□ 0.07
VIM-208ENST00000497849 RBP3P10745 1247 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 TFEBP19484 476 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 DNASE1P24855 282 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 NUP107P57740 925 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 PMPCAQ10713 525 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 NAA25Q14CX7 972 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 CCDC38Q502W7 563 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 CMPK2Q5EBM0 449 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 MFSD4BQ5TF39 518 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 TMEM198Q66K66 360 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 ZNF425Q6IV72 752 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 ZNF534Q76KX8 674 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 CDKL3Q8IVW4 592 aaPredicted RBP15.48■□□□□ 0.07
VIM-208ENST00000497849 LGI4Q8N135 537 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 TXLNBQ8N3L3 684 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 RAB42Q8N4Z0 105 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 WFDC11Q8NEX6 87 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 OR9A4Q8NGU2 314 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 ARSGQ96EG1 525 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 PPP1R2P1Q96PQ5 205 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 ALS2CR12Q96Q35 445 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 FAM118BQ9BPY3 351 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 FERMT1Q9BQL6 677 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 GPATCH1Q9BRR8 931 aaKnown RBP15.48■□□□□ 0.07
VIM-208ENST00000497849 CDCP1Q9H5V8 836 aa15.48■□□□□ 0.07
VIM-208ENST00000497849 R3HDM2Q9Y2K5 976 aaKnown RBP15.48■□□□□ 0.07
VIM-208ENST00000497849 TFECO14948 347 aaPredicted RBP15.47■□□□□ 0.07
VIM-208ENST00000497849 HS6ST1O60243 411 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 CDC40O60508 579 aaKnown RBP eCLIP15.47■□□□□ 0.07
VIM-208ENST00000497849 FTCDO95954 541 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 RFC3P40938 356 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 AVPR1BP47901 424 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 MEOX1P50221 254 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 NR0B1P51843 470 aaKnown RBP15.47■□□□□ 0.07
VIM-208ENST00000497849 C11orf63Q6NUN7 778 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 PAPD4Q6PIY7 484 aaKnown RBP15.47■□□□□ 0.07
VIM-208ENST00000497849 SUSD1Q6UWL2 747 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 PRSS41Q7RTY9 318 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 ZZZ3Q8IYH5 903 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 LRRC57Q8N9N7 239 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 POGLUT1Q8NBL1 392 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 OR51Q1Q8NH59 317 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 LRRC45Q96CN5 670 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 RMND5BQ96G75 393 aaPredicted RBP15.47■□□□□ 0.07
VIM-208ENST00000497849 REPIN1Q9BWE0 567 aaKnown RBP15.47■□□□□ 0.07
VIM-208ENST00000497849 TSSK1BQ9BXA7 367 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 TSGA10Q9BZW7 698 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 CLEC4MQ9H2X3 399 aaPredicted RBP15.47■□□□□ 0.07
VIM-208ENST00000497849 TRIM45Q9H8W5 580 aaPredicted RBP15.47■□□□□ 0.07
VIM-208ENST00000497849 MRPS30Q9NP92 439 aaKnown RBP15.47■□□□□ 0.07
VIM-208ENST00000497849 PLSCR2Q9NRY7 297 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 SPATA7Q9P0W8 599 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 SLC2A6Q9UGQ3 507 aa15.47■□□□□ 0.07
VIM-208ENST00000497849 PACSIN2Q9UNF0 486 aaPredicted RBP15.47■□□□□ 0.07
VIM-208ENST00000497849 H0YIG0 161 aa15.46■□□□□ 0.07
VIM-208ENST00000497849 STK10O94804 968 aaKnown RBP15.46■□□□□ 0.07
VIM-208ENST00000497849 METTL18O95568 372 aa15.46■□□□□ 0.07
VIM-208ENST00000497849 ERGP11308 486 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms