RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 POLHQ9Y253 713 aa7.7□□□□□ -1.18
USP40-216ENST00000485943 FARSAQ9Y285 508 aaKnown RBP7.7□□□□□ -1.18
USP40-216ENST00000485943 MAN2B2Q9Y2E5 1009 aa7.7□□□□□ -1.18
USP40-216ENST00000485943 TMEM184BQ9Y519 407 aaPredicted RBP7.7□□□□□ -1.18
USP40-216ENST00000485943 HEMK1Q9Y5R4 338 aaPredicted RBP7.7□□□□□ -1.18
USP40-216ENST00000485943 CACNA1BQ00975 2339 aa7.7□□□□□ -1.18
USP40-216ENST00000485943 SNRNP200O75643 2136 aaKnown RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 LOC101059948A0A1B0GTJ6 334 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 A0A1W2PNU3 283 aaPredicted RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 GOLGA6L10A6NI86 522 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 TRIM49D1C9J1S8 452 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 E7ENX8 843 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 CDC7O00311 574 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 NDUFS4O43181 175 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 RIPK2O43353 540 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 CRCPO75575 148 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 STK16O75716 305 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 IGHEP01854 428 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 ABHD2P08910 425 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 TPBGLP0DKB5 382 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 SFTPCP11686 197 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 CDH1P12830 882 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 EPB42P16452 691 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 ZNF28P17035 718 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 PEBP1P30086 187 aaKnown RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 OTX2P32243 289 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 PIK3CGP48736 1102 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 RRADP55042 308 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 CDKL1Q00532 357 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 IRF8Q02556 426 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 TAP2Q03519 686 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 CDC16Q13042 620 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 LAPTM5Q13571 262 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 TGFBIQ15582 683 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 PDK4Q16654 411 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 PHKG1Q16816 387 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 DEFB109BQ30KR1 87 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 XKR6Q5GH73 641 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 NIPAL1Q6NVV3 410 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 PRMT9Q6P2P2 845 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 BORAQ6PGQ7 559 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 CYHR1Q6ZMK1 362 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 ABHD13Q7L211 337 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 ASPGQ86U10 573 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 THOC6Q86W42 341 aaKnown RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 RELL1Q8IUW5 271 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 CEP97Q8IW35 865 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 METTL27Q8N6F8 245 aaPredicted RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 ENDOVQ8N8Q3 282 aaKnown RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 EIF1ADQ8N9N8 165 aaKnown RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 OR2A1Q8NGT9 310 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 ZCCHC10Q8TBK6 192 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 CT55Q8WUE5 264 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 KCTD4Q8WVF5 259 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 SLC13A3Q8WWT9 602 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 METTL21AQ8WXB1 218 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 UBE2E3Q969T4 207 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 PMEPA1Q969W9 287 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 UBL7Q96S82 380 aaPredicted RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 NRTNQ99748 197 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 WDR83Q9BRX9 315 aaKnown RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 DHRS4Q9BTZ2 278 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 CHST8Q9H2A9 424 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 CENPHQ9H3R5 247 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 ANKHQ9HCJ1 492 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 ZNF304Q9HCX3 659 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 PCMTD2Q9NV79 361 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 DNAJC11Q9NVH1 559 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.69□□□□□ -1.18
USP40-216ENST00000485943 NXT1Q9UKK6 140 aaKnown RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 TMCO1Q9UM00 188 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 SLC22A14Q9Y267 594 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 PTRH2Q9Y3E5 179 aaKnown RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 TNPO3Q9Y5L0 923 aaKnown RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 MAU2Q9Y6X3 613 aa7.69□□□□□ -1.18
USP40-216ENST00000485943 V9GYY5 206 aaPredicted RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 MAP1BP46821 2468 aaKnown RBP7.69□□□□□ -1.18
USP40-216ENST00000485943 ADAMTS20P59510 1910 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 APC2O95996 2303 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 HEATR5BQ9P2D3 2071 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 H0YGG7 62 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 K7ENP7 123 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 TAF4O00268 1085 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 HAT1O14929 419 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 DSCR3O14972 297 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 ATXN7O15265 892 aaPredicted RBP7.68□□□□□ -1.18
USP40-216ENST00000485943 KLHL41O60662 606 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 KERAO60938 352 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 CREG1O75629 220 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 KLHL2O95198 593 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 DLGAP3O95886 979 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 C2P06681 752 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 HEXBP07686 556 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 MSL3P1P0C860 447 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 SPTBP11277 2137 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 PCNAP12004 261 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 NEFHP12036 1026 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 CD1DP15813 335 aa7.68□□□□□ -1.18
USP40-216ENST00000485943 PTPN4P29074 926 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms