RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 RALGAPA1Q6GYQ0 2036 aa16.85■□□□□ 0.29
UPF3A-206ENST00000480362 ARID1BQ8NFD5 2236 aaPredicted RBP16.84■□□□□ 0.29
UPF3A-206ENST00000480362 CABIN1Q9Y6J0 2220 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 UBDO15205 165 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 DUX1O43812 170 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 SH3BGRLO75368 114 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 RSL1D1O76021 490 aaKnown RBP16.84■□□□□ 0.29
UPF3A-206ENST00000480362 TGFB1P01137 390 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 LMNAP02545 664 aaKnown RBP16.84■□□□□ 0.29
UPF3A-206ENST00000480362 CKMT1AP12532 417 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 HOXB3P14651 431 aaPredicted RBP16.84■□□□□ 0.29
UPF3A-206ENST00000480362 CD1CP29017 333 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 BCL6P41182 706 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 NBL1P41271 181 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 DUSP3P51452 185 aaPredicted RBP16.84■□□□□ 0.29
UPF3A-206ENST00000480362 GFERP55789 205 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 CYP4F2P78329 520 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 INAVAQ3KP66 663 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 FBXO42Q6P3S6 717 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 FOXR1Q6PIV2 292 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 FAM92BQ6ZTR7 304 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 USP53Q70EK8 1073 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 CHSY3Q70JA7 882 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 SPATA19Q7Z5L4 167 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 SPRED1Q7Z699 444 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 MFSD9Q8NBP5 474 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 BAHD1Q8TBE0 780 aaPredicted RBP16.84■□□□□ 0.29
UPF3A-206ENST00000480362 NAT6Q93015 286 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 ZDHHC12Q96GR4 267 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 MARK4Q96L34 752 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 CATSPER2Q96P56 530 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 TRAPPC9Q96Q05 1148 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 MAP3K3Q99759 626 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 SARGQ9BW04 601 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 NMUR2Q9GZQ4 415 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 MYLK2Q9H1R3 596 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 LRTM1Q9HBL6 345 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 SAR1AQ9NR31 198 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 C1GALT1Q9NS00 363 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 VPS29Q9UBQ0 182 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 SLC12A4Q9UP95 1085 aa16.84■□□□□ 0.29
UPF3A-206ENST00000480362 SLC9B1P1A6NJY1 282 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 CCT8L1PA6NM43 557 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 EBAG9O00559 213 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 FLRT2O43155 660 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 KIF1CO43896 1103 aaKnown RBP16.83■□□□□ 0.28
UPF3A-206ENST00000480362 PRAMEF10O60809 474 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 SEC22BO75396 215 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 ETHE1O95571 254 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 EZRP15311 586 aaKnown RBP16.83■□□□□ 0.28
UPF3A-206ENST00000480362 ST6GAL1P15907 406 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 PRPH2P23942 346 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 SERPINB1P30740 379 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 RPS15AP62244 130 aaKnown RBP16.83■□□□□ 0.28
UPF3A-206ENST00000480362 CFHR1Q03591 330 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 EMX2Q04743 252 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 CYP4F3Q08477 520 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 ZIC1Q15915 447 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 CSRP2Q16527 193 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 RFTN2Q52LD8 501 aaPredicted RBP16.83■□□□□ 0.28
UPF3A-206ENST00000480362 OGFOD2Q6N063 350 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 C6orf89Q6UWU4 347 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 PRR23CQ6ZRP0 262 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 TRPM8Q7Z2W7 1104 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 FITM2Q8N6M3 262 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 FNDC5Q8NAU1 212 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 TTLQ8NG68 377 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 RHBDD1Q8TEB9 315 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 CMTM7Q96FZ5 175 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 CCDC3Q9BQI4 270 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 EDEM2Q9BV94 578 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 TMEM9BQ9NQ34 198 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 RXFP3Q9NSD7 469 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 NMRK1Q9NWW6 199 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 C1orf109Q9NX04 203 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 ZFP69BQ9UJL9 534 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 PILRAQ9UKJ1 303 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 PCDHGA4Q9Y5G9 962 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 AP1M2Q9Y6Q5 423 aa16.83■□□□□ 0.28
UPF3A-206ENST00000480362 SNRNP200O75643 2136 aaKnown RBP16.82■□□□□ 0.28
UPF3A-206ENST00000480362 HEATR5BQ9P2D3 2071 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 A0A0J9YVX5 310 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 TLCD2A6NGC4 264 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 NPIPB8E9PQR5 432 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 CTSVO60911 334 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 CLEC3AO75596 197 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 LDOC1O95751 146 aaPredicted RBP16.82■□□□□ 0.28
UPF3A-206ENST00000480362 SERPIND1P05546 499 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 ALDOCP09972 364 aaKnown RBP16.82■□□□□ 0.28
UPF3A-206ENST00000480362 PTX3P26022 381 aaPredicted RBP16.82■□□□□ 0.28
UPF3A-206ENST00000480362 AHRP35869 848 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 ERVK-8P63133 956 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 RPL38P63173 70 aaKnown RBP16.82■□□□□ 0.28
UPF3A-206ENST00000480362 CCL7P80098 99 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 RELAQ04206 551 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 SLC14A1Q13336 389 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 UBAP2LQ14157 1087 aaKnown RBP16.82■□□□□ 0.28
UPF3A-206ENST00000480362 SMU1Q2TAY7 513 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 ZFAND4Q86XD8 727 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 PLXDC1Q8IUK5 500 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms