RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 IQCMA0A1B0GVH7 501 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 ANKRD66B4E2M5 251 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 AP2S1P53680 142 aaPredicted RBP13.11□□□□□ -0.31
USP42-206ENST00000479544 TEX47Q8TBZ9 253 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 SNAPC3Q92966 411 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 TADA1Q96BN2 335 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 RDH8Q9NYR8 311 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 NFKBIL1Q9UBC1 381 aaPredicted RBP13.11□□□□□ -0.31
USP42-206ENST00000479544 AGAP5A6NIR3 686 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 MATN4O95460 622 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 CLDN7O95471 211 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 SBK3P0C264 359 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 ARCN1P48444 511 aaKnown RBP13.11□□□□□ -0.31
USP42-206ENST00000479544 PCBP1Q15365 356 aaKnown RBP eCLIP13.11□□□□□ -0.31
USP42-206ENST00000479544 CHMP1BQ7LBR1 199 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 SPRED1Q7Z699 444 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 B3GNT8Q7Z7M8 397 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 PARP16Q8N5Y8 322 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 CSGALNACT1Q8TDX6 532 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 TSGA13Q96PP4 275 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 TTYH1Q9H313 450 aaPredicted RBP13.11□□□□□ -0.31
USP42-206ENST00000479544 ANKRD36CQ5JPF3 1778 aa13.11□□□□□ -0.31
USP42-206ENST00000479544 A0A0G2JLL6 359 aaPredicted RBP13.1□□□□□ -0.31
USP42-206ENST00000479544 A0A1B0GVC2 190 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 A6NIN4 97 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 KDM4BO94953 1096 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 RLN1P04808 185 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 IGFBP6P24592 240 aaPredicted RBP13.1□□□□□ -0.31
USP42-206ENST00000479544 OR1D2P34982 312 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 ST8SIA6P61647 398 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 PURAQ00577 322 aaKnown RBP13.1□□□□□ -0.31
USP42-206ENST00000479544 WDR45BQ5MNZ6 344 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 PRRT2Q7Z6L0 340 aaPredicted RBP13.1□□□□□ -0.31
USP42-206ENST00000479544 PEX5LQ8IYB4 626 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 SLC5A8Q8N695 610 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 SLC38A2Q96QD8 506 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 ZNF382Q96SR6 550 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 PTPN18Q99952 460 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 KCTD5Q9NXV2 234 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 FLRT1Q9NZU1 646 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 ABCG2Q9UNQ0 655 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 TRBC2A0A5B9 178 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 PCDH1Q08174 1060 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 OXA1LQ15070 435 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 CHRNA6Q15825 494 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 VMACQ2NL98 169 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 PIK3R6Q5UE93 754 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 FRG2Q64ET8 278 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 BICRALQ6AI39 1079 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 OR8J3Q8NGG0 315 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 RAB8BQ92930 207 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 FRG2BQ96QU4 278 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 TUBB1Q9H4B7 451 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 ACSL6Q9UKU0 697 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 IGKV6D-21A0A0A0MT36 114 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 IGKV6-21A0A0C4DH24 114 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 FDXRP22570 491 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 SOX3P41225 446 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 ANXA8L1Q5VT79 327 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 LRRC66Q68CR7 880 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 CERS6Q6ZMG9 384 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 MARCH9Q86YJ5 346 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 MEIOBQ8N635 442 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 OR9Q2Q8NGE9 314 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 TSPEARQ8WU66 669 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 MRPS31Q92665 395 aaKnown RBP13.1□□□□□ -0.31
USP42-206ENST00000479544 L3HYPDHQ96EM0 354 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 KCTD7Q96MP8 289 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 SLC2A11Q9BYW1 496 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 RANGRFQ9HD47 186 aaPredicted RBP13.1□□□□□ -0.31
USP42-206ENST00000479544 GPRC5BQ9NZH0 403 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 COL5A3P25940 1745 aaPredicted RBP13.1□□□□□ -0.31
USP42-206ENST00000479544 COL24A1Q17RW2 1714 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 TLR4O00206 839 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 SEC14L2O76054 403 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 PRLP01236 227 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 ZNF81P51508 661 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 SCARB2Q14108 478 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 C1QTNF12Q5T7M4 302 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 PELI3Q8N2H9 469 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 RNF175Q8N4F7 328 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 TMEM174Q8WUU8 243 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 JPH3Q8WXH2 748 aaPredicted RBP13.1□□□□□ -0.31
USP42-206ENST00000479544 RELTQ969Z4 430 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 TMEM169Q96HH4 297 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 UCK2Q9BZX2 261 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 SMURF1Q9HCE7 757 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 ACOT13Q9NPJ3 140 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 PCDHA9Q9Y5H5 950 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 SPO11Q9Y5K1 396 aa13.1□□□□□ -0.31
USP42-206ENST00000479544 A0A1B0GTL3 188 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 ANKRD34BA5PLL1 514 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 ACSL4O60488 711 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 STATHP02808 62 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 IL7P13232 177 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 C4BPBP20851 252 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 PRPS1L1P21108 318 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 CASP3P42574 277 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 SRSF11Q05519 484 aaKnown RBP13.09□□□□□ -0.31
USP42-206ENST00000479544 CRB2Q5IJ48 1285 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms