RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 SLC34A3Q8N130 599 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 SIRT6Q8N6T7 355 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CALML6Q8TD86 181 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 EEF1AKMT1Q8WVE0 214 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 NR4A3Q92570 626 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 CCDC138Q96M89 665 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 TUBB6Q9BUF5 446 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 SGPP1Q9BX95 441 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 GRPEL1Q9HAV7 217 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 PLAC1Q9HBJ0 212 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 OLAHQ9NV23 265 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 ADAMTS6Q9UKP5 1117 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 MKL2Q9ULH7 1088 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 SH2B3Q9UQQ2 575 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 NCOA6Q14686 2063 aaPredicted RBP11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 DCHS2Q6V1P9 2916 aa11.59□□□□□ -0.55
MSH5-SAPCD1-205ENST00000476085 FBN2P35556 2912 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 DYTNA2CJ06 578 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TSPAN12O95859 305 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 NPPBP16860 134 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 BCL6P41182 706 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 RPS15AP62244 130 aaKnown RBP11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TSTA3Q13630 321 aaPredicted RBP11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 NDUFA9Q16795 377 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PLAG1Q6DJT9 500 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 FAAH2Q6GMR7 532 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 UBE2R2Q712K3 238 aaPredicted RBP11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CPEB2Q7Z5Q1 589 aaKnown RBP11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 GALNT7Q86SF2 657 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CNTN4Q8IWV2 1026 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 AFAP1L2Q8N4X5 818 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PLPP5Q8NEB5 264 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 OR4K1Q8NGD4 311 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 OR9A4Q8NGU2 314 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 OR51Q1Q8NH59 317 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 DNAJB8Q8NHS0 232 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ACTRT1Q8TDG2 376 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PCBD2Q9H0N5 130 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CCDC68Q9H2F9 335 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PARVBQ9HBI1 364 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 C20orf96Q9NUD7 363 aaPredicted RBP11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ABI3Q9P2A4 366 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PCDHGB6Q9Y5F9 930 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PDZD2O15018 2839 aa11.58□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 A0A1B0GUH1 482 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SLC16A5O15375 505 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ZG16O60844 167 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 WFS1O76024 890 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 WISP2O76076 250 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SYF2O95926 243 aaKnown RBP11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 AHSGP02765 367 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 C8orf89P0DMQ9 161 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 IVDP26440 423 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 MST1P26927 711 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 AVPR1BP47901 424 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 FNTAP49354 379 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 TBPL1P62380 186 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 AP2B1P63010 937 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PTK6Q13882 451 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 MSS51Q4VC12 460 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 LRRC8EQ6NSJ5 796 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 HIBCHQ6NVY1 386 aaPredicted RBP11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 AGTRAPQ6RW13 159 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PAQR3Q6TCH7 311 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 LCTLQ6UWM7 567 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 LANCL3Q6ZV70 420 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PDSS2Q86YH6 399 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PPIL6Q8IXY8 311 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 KCT2Q8NC54 265 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ABHD11Q8NFV4 315 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 MCOLN3Q8TDD5 553 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 NPAS2Q99743 824 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 MACROD1Q9BQ69 325 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 FAM167BQ9BTA0 163 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 YIPF2Q9BWQ6 316 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 FAM129AQ9BZQ8 928 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CCDC177Q9NQR7 707 aaPredicted RBP11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 LANCL2Q9NS86 450 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 STMN3Q9NZ72 180 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 ENTPD4Q9Y227 616 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SLC22A7Q9Y694 548 aa11.57□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 OR5H15A6NDH6 313 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 OR2W5A6NFC9 320 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 STATHP02808 62 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 C8GP07360 202 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PGAM1P18669 254 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 XCR1P46094 333 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CDKN2DP55273 166 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PER3P56645 1201 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 KCNK10P57789 538 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 RHAGQ02094 409 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 SP140Q13342 867 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 CRYMQ14894 314 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 PHKG1Q16816 387 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 RBM20Q5T481 1227 aaKnown RBP11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 THEMIS2Q5TEJ8 643 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 UGT3A1Q6NUS8 523 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 MBOAT1Q6ZNC8 495 aa11.56□□□□□ -0.56
MSH5-SAPCD1-205ENST00000476085 KIAA0408Q6ZU52 694 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms