RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 PPP1R7Q15435 360 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 TRIP13Q15645 432 aaPredicted RBP6.71□□□□□ -1.34
VPS41-208ENST00000448833 EXT1Q16394 746 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 HKDC1Q2TB90 917 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 HSP90AA5PQ58FG0 334 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.71□□□□□ -1.34
VPS41-208ENST00000448833 SPANXN3Q5MJ09 141 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 SWT1Q5T5J6 900 aaKnown RBP6.71□□□□□ -1.34
VPS41-208ENST00000448833 TMEM205Q6UW68 189 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 CYHR1Q6ZMK1 362 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 GALNT7Q86SF2 657 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 LAPTM4BQ86VI4 370 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 C17orf64Q86WR6 236 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 PRSS58Q8IYP2 241 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 MYO1HQ8N1T3 1032 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 AMER3Q8N944 861 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 ACTRT1Q8TDG2 376 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 FAM136AQ96C01 138 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 ZNF354BQ96LW1 612 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 RUNDC3BQ96NL0 473 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 PRAP1Q96NZ9 151 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 CYTH2Q99418 400 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 GPR21Q99679 349 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.71□□□□□ -1.34
VPS41-208ENST00000448833 CLK4Q9HAZ1 481 aaKnown RBP6.71□□□□□ -1.34
VPS41-208ENST00000448833 FBXO6Q9NRD1 293 aaPredicted RBP6.71□□□□□ -1.34
VPS41-208ENST00000448833 PTGFRNQ9P2B2 879 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 SUCOQ9UBS9 1254 aaKnown RBP6.71□□□□□ -1.34
VPS41-208ENST00000448833 OSGIN2Q9Y236 505 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 SLC22A7Q9Y694 548 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 MYO7BQ6PIF6 2116 aa6.71□□□□□ -1.34
VPS41-208ENST00000448833 ITPR2Q14571 2701 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 DOPEY1Q5JWR5 2465 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 GTF3C1Q12789 2109 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 IGKV1-8A0A0C4DH67 115 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 A1L4Q6 167 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 OR5H15A6NDH6 313 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 GOLGA8MH3BSY2 632 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 FOXS1O43638 330 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 PRAMEF2O60811 474 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 HAUS5O94927 633 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 RASAL1O95294 804 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 STSP08842 583 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 ENO2P09104 434 aaPredicted RBP6.7□□□□□ -1.34
VPS41-208ENST00000448833 CD46P15529 392 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 IMPA1P29218 277 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 HPDP32754 393 aaPredicted RBP6.7□□□□□ -1.34
VPS41-208ENST00000448833 SOX11P35716 441 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 BCL6P41182 706 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 SLC1A2P43004 574 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 MAGEA3P43357 314 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 FOXL2P58012 376 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 TAS2R50P59544 299 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 ACTN3Q08043 901 aaPredicted RBP6.7□□□□□ -1.34
VPS41-208ENST00000448833 Q0VFX4 171 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 PWP1Q13610 501 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 CUL1Q13616 776 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 NAA30Q147X3 362 aaPredicted RBP6.7□□□□□ -1.34
VPS41-208ENST00000448833 MEP1AQ16819 746 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 MINDY4Q4G0A6 757 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 KRTCAP3Q53RY4 240 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 MFSD4BQ5TF39 518 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 DUPD1Q68J44 220 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 PLAG1Q6DJT9 500 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 CAPN13Q6MZZ7 669 aaPredicted RBP6.7□□□□□ -1.34
VPS41-208ENST00000448833 ADGRD1Q6QNK2 874 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 TMEM207Q6UWW9 146 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 SYDE1Q6ZW31 735 aaPredicted RBP6.7□□□□□ -1.34
VPS41-208ENST00000448833 CPEB2Q7Z5Q1 589 aaKnown RBP6.7□□□□□ -1.34
VPS41-208ENST00000448833 STRA8Q7Z7C7 330 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 DENND6AQ8IWF6 608 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 CPNE9Q8IYJ1 553 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 PDIK1LQ8N165 341 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 NAT8LQ8N9F0 302 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 FAM98AQ8NCA5 519 aaKnown RBP6.7□□□□□ -1.34
VPS41-208ENST00000448833 C2CD4AQ8NCU7 369 aaPredicted RBP6.7□□□□□ -1.34
VPS41-208ENST00000448833 OR51Q1Q8NH59 317 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 M1APQ8TC57 530 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 CD200R1Q8TD46 325 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 BRIX1Q8TDN6 353 aaKnown RBP6.7□□□□□ -1.34
VPS41-208ENST00000448833 SLC13A3Q8WWT9 602 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 ANKRD7Q92527 254 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 PSMF1Q92530 271 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 NR4A3Q92570 626 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 RELTQ969Z4 430 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 C8orf44Q96CB5 159 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 LRRC39Q96DD0 335 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 SIGLEC10Q96LC7 697 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 IMMP1LQ96LU5 166 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 MAGEB10Q96LZ2 347 aaPredicted RBP6.7□□□□□ -1.34
VPS41-208ENST00000448833 OR1F2PQ96R84 312 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 SLX1AQ9BQ83 275 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 AARSD1Q9BTE6 412 aaKnown RBP6.7□□□□□ -1.34
VPS41-208ENST00000448833 ABCF3Q9NUQ8 709 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 GALPQ9UBC7 116 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 TSR3Q9UJK0 312 aaKnown RBP6.7□□□□□ -1.34
VPS41-208ENST00000448833 NTNG1Q9Y2I2 539 aa6.7□□□□□ -1.34
VPS41-208ENST00000448833 UNC79Q9P2D8 2635 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 SYNDIG1LA6NDD5 238 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 MASP2O00187 686 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms