RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 AGRPO00253 132 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 ITM2AO43736 263 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 CRCPO75575 148 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 LYPLA1O75608 230 aaPredicted RBP15.1■□□□□ 0.01
USP40-206ENST00000443711 CHRNGP07510 517 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 GSTM2P28161 218 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 HMOX2P30519 316 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 SERPINB1P30740 379 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 ARRB2P32121 409 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 BCL6P41182 706 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 MC2RQ01718 297 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 CYP4F3Q08477 520 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 ZRSR2Q15696 482 aaKnown RBP15.1■□□□□ 0.01
USP40-206ENST00000443711 GPR19Q15760 415 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 BPHLQ86WA6 291 aaPredicted RBP15.1■□□□□ 0.01
USP40-206ENST00000443711 LAS2Q8IYD9 372 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 KIRREL3Q8IZU9 778 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 CHCHD4Q8N4Q1 142 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 CDYL2Q8N8U2 506 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 TRPV3Q8NET8 790 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 OR7G3Q8NG95 312 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 OR8K5Q8NH50 307 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 WDR36Q8NI36 951 aaKnown RBP15.1■□□□□ 0.01
USP40-206ENST00000443711 SEC16BQ96JE7 1060 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 FCRL4Q96PJ5 515 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 OR2A5Q96R48 311 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 ILKAPQ9H0C8 392 aaPredicted RBP15.1■□□□□ 0.01
USP40-206ENST00000443711 RHBGQ9H310 441 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 OCIAD1Q9NX40 245 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 SIDT1Q9NXL6 827 aaKnown RBP15.1■□□□□ 0.01
USP40-206ENST00000443711 FAM53CQ9NYF3 392 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 ADGRE2Q9UHX3 823 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 ZFP69BQ9UJL9 534 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 SERTAD3Q9UJW9 196 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 SNX6Q9UNH7 406 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 LOXL2Q9Y4K0 774 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 AP1M2Q9Y6Q5 423 aa15.1■□□□□ 0.01
USP40-206ENST00000443711 B4E171 279 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 TMEM150CB9EJG8 249 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 H0YGG7 62 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 TXNDC9O14530 226 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 FFAR3O14843 346 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 AZIN1O14977 448 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 GPR42O15529 346 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 SNNO75324 88 aaPredicted RBP15.09■□□□□ 0.01
USP40-206ENST00000443711 KRT6AP02538 564 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 KRT6BP04259 564 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 CAPN1P07384 714 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 FGF4P08620 206 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 UROSP10746 265 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 SPTBP11277 2137 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 PCNAP12004 261 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 TSPAN7P41732 249 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 ID4P47928 161 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 KRT6CP48668 564 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 VSX2P58304 361 aaPredicted RBP15.09■□□□□ 0.01
USP40-206ENST00000443711 ARF3P61204 181 aaPredicted RBP15.09■□□□□ 0.01
USP40-206ENST00000443711 PHEXP78562 749 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 FOXM1Q08050 763 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 IFT88Q13099 833 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 TUBB3Q13509 450 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 DEFB110Q30KQ9 67 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 TCTE1Q5JU00 501 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 C10orf62Q5T681 223 aaPredicted RBP15.09■□□□□ 0.01
USP40-206ENST00000443711 FRMPD2BQ6IN97 320 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 ZNF655Q8N720 491 aaPredicted RBP15.09■□□□□ 0.01
USP40-206ENST00000443711 ANKRD53Q8N9V6 530 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 ZNF501Q96CX3 271 aaPredicted RBP15.09■□□□□ 0.01
USP40-206ENST00000443711 OR6C1Q96RD1 312 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 NLNQ9BYT8 704 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 ELOVL6Q9H5J4 265 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 ZNF395Q9H8N7 513 aaPredicted RBP15.09■□□□□ 0.01
USP40-206ENST00000443711 PRM3Q9NNZ6 103 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 FBXO8Q9NRD0 319 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 RARRES3Q9UL19 164 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 RAP2CQ9Y3L5 183 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 TSC22D4Q9Y3Q8 395 aa15.09■□□□□ 0.01
USP40-206ENST00000443711 SPTBN4Q9H254 2564 aa15.08■□□□□ 0
USP40-206ENST00000443711 LOC105369274A0A096LPK9 316 aa15.08■□□□□ 0
USP40-206ENST00000443711 LOC102723532A0A0G2JNH3 316 aa15.08■□□□□ 0
USP40-206ENST00000443711 MANBAO00462 879 aa15.08■□□□□ 0
USP40-206ENST00000443711 HCRTR1O43613 425 aa15.08■□□□□ 0
USP40-206ENST00000443711 EIF2S1P05198 315 aaKnown RBP15.08■□□□□ 0
USP40-206ENST00000443711 JMJD7P0C870 316 aa15.08■□□□□ 0
USP40-206ENST00000443711 CCL4P13236 92 aa15.08■□□□□ 0
USP40-206ENST00000443711 MDH1P40925 334 aaKnown RBP15.08■□□□□ 0
USP40-206ENST00000443711 ITGA1P56199 1179 aa15.08■□□□□ 0
USP40-206ENST00000443711 IL11RAQ14626 422 aa15.08■□□□□ 0
USP40-206ENST00000443711 SH2D4BQ5SQS7 431 aa15.08■□□□□ 0
USP40-206ENST00000443711 WASHC2DQ5SRD0 308 aa15.08■□□□□ 0
USP40-206ENST00000443711 FRG2Q64ET8 278 aa15.08■□□□□ 0
USP40-206ENST00000443711 ATG14Q6ZNE5 492 aa15.08■□□□□ 0
USP40-206ENST00000443711 RGS9BPQ6ZS82 235 aa15.08■□□□□ 0
USP40-206ENST00000443711 ASPGQ86U10 573 aa15.08■□□□□ 0
USP40-206ENST00000443711 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.08■□□□□ 0
USP40-206ENST00000443711 GPR135Q8IZ08 494 aa15.08■□□□□ 0
USP40-206ENST00000443711 CLYBLQ8N0X4 340 aa15.08■□□□□ 0
USP40-206ENST00000443711 OR4N4Q8N0Y3 316 aa15.08■□□□□ 0
USP40-206ENST00000443711 BMPERQ8N8U9 685 aa15.08■□□□□ 0
USP40-206ENST00000443711 CAMKVQ8NCB2 501 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms