RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 CALML6Q8TD86 181 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 ASB11Q8WXH4 323 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 HAS2Q92819 552 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 FAM167BQ9BTA0 163 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 SEC14L3Q9UDX4 400 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 FBXO5Q9UKT4 447 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 SH2B3Q9UQQ2 575 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 MED16Q9Y2X0 877 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 DHRS7Q9Y394 339 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 CENPEQ02224 2701 aa13.73□□□□□ -0.21
SDC1-204ENST00000429035 ZCWPW2A0A1B0GU75 182 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 A0A1W2PQ72 361 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 PABPN1LA6NDY0 278 aaKnown RBP13.72□□□□□ -0.21
SDC1-204ENST00000429035 ZNF860A6NHJ4 632 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 FAM227AF5H4B4 570 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 PRAMEF2O60811 474 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 RDH16O75452 317 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 CDC123O75794 336 aaPredicted RBP13.72□□□□□ -0.21
SDC1-204ENST00000429035 NSA2O95478 260 aaKnown RBP13.72□□□□□ -0.21
SDC1-204ENST00000429035 CRYABP02511 175 aaKnown RBP13.72□□□□□ -0.21
SDC1-204ENST00000429035 MLNP12872 115 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 ICAM2P13598 275 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 COILP38432 576 aaPredicted RBP13.72□□□□□ -0.21
SDC1-204ENST00000429035 MAGEA6P43360 314 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 RGS4P49798 205 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 RBPJQ06330 500 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 ZNF324BQ6AW86 544 aaPredicted RBP13.72□□□□□ -0.21
SDC1-204ENST00000429035 TMEM207Q6UWW9 146 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 VN1R4Q7Z5H5 301 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 CPEB2Q7Z5Q1 589 aaKnown RBP13.72□□□□□ -0.21
SDC1-204ENST00000429035 C17orf64Q86WR6 236 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 TICAM1Q8IUC6 712 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 PALM2Q8IXS6 379 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 SHISA5Q8N114 240 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 SLC34A3Q8N130 599 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 BEST3Q8N1M1 668 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 ARHGEF39Q8N4T4 335 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.72□□□□□ -0.21
SDC1-204ENST00000429035 OR51Q1Q8NH59 317 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 MS4A14Q96JA4 679 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 AARSD1Q9BTE6 412 aaKnown RBP13.72□□□□□ -0.21
SDC1-204ENST00000429035 UNKQ9C0B0 810 aaKnown RBP13.72□□□□□ -0.21
SDC1-204ENST00000429035 ATG10Q9H0Y0 220 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 KCNK13Q9HB14 408 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 ANKHQ9HCJ1 492 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 TMEM184CQ9NVA4 438 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 ANKRD10Q9NXR5 420 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 ABI3Q9P2A4 366 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 ENTPD4Q9Y227 616 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 COMMD10Q9Y6G5 202 aa13.72□□□□□ -0.21
SDC1-204ENST00000429035 OR2W5A6NFC9 320 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 H0YIG0 161 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 CCL21O00585 134 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 HAUS5O94927 633 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 MYBL2P10244 700 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 CDH1P12830 882 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 MST1P26927 711 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 BCL6P41182 706 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 SKIV2L2P42285 1042 aaKnown RBP13.71□□□□□ -0.21
SDC1-204ENST00000429035 CSNK1G2P78368 415 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 HSP90AA5PQ58FG0 334 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 ZNF766Q5HY98 468 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 ARMC3Q5W041 872 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 SP5Q6BEB4 398 aaPredicted RBP13.71□□□□□ -0.21
SDC1-204ENST00000429035 UGT3A1Q6NUS8 523 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 CCDC137Q6PK04 289 aaKnown RBP13.71□□□□□ -0.21
SDC1-204ENST00000429035 CYHR1Q6ZMK1 362 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 ASPGQ86U10 573 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 LRRC56Q8IYG6 542 aaPredicted RBP13.71□□□□□ -0.21
SDC1-204ENST00000429035 MYO1HQ8N1T3 1032 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 CAMKVQ8NCB2 501 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 MCUQ8NE86 351 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 LINGO1Q96FE5 620 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 PEX11GQ96HA9 241 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 RNF32Q9H0A6 362 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 KLHL1Q9NR64 748 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 STMN3Q9NZ72 180 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 KLHL42Q9P2K6 505 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 ADAMTS6Q9UKP5 1117 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 PCNX1Q96RV3 2341 aa13.71□□□□□ -0.21
SDC1-204ENST00000429035 MAGEB16A2A368 324 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 GFYI3L273 518 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 NRDCO43847 1150 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 SERPIND1P05546 499 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 SNRPB2P08579 225 aaKnown RBP13.7□□□□□ -0.22
SDC1-204ENST00000429035 SLC35G6P0C7Q6 338 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 PRF1P14222 555 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 GRK3P35626 688 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 AGTR2P50052 363 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 CASP6P55212 293 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 RELAQ04206 551 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 NAE1Q13564 534 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 PTK6Q13882 451 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 LRRC8EQ6NSJ5 796 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 TMEM214Q6NUQ4 689 aaKnown RBP13.7□□□□□ -0.22
SDC1-204ENST00000429035 PAPD4Q6PIY7 484 aaKnown RBP13.7□□□□□ -0.22
SDC1-204ENST00000429035 AGTRAPQ6RW13 159 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 ZNF662Q6ZS27 426 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 ANKRD37Q7Z713 158 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 SLC26A11Q86WA9 606 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 399.4 ms