RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 VN1R4Q7Z5H5 301 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 NUDCD3Q8IVD9 361 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 OR4N4Q8N0Y3 316 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 KRT78Q8N1N4 520 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 TBC1D19Q8N5T2 526 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 ANKRD53Q8N9V6 530 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 MFSD9Q8NBP5 474 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 OR6Y1Q8NGX8 325 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 N4BP2L2Q92802 583 aaPredicted RBP16.25■□□□□ 0.19
COL7A1-202ENST00000422991 ATP6V1E2Q96A05 226 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 TAAR9Q96RI9 348 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 CTRCQ99895 268 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 DDA1Q9BW61 102 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 TMEM121BQ9BXQ6 578 aaPredicted RBP16.25■□□□□ 0.19
COL7A1-202ENST00000422991 NRSN2Q9GZP1 204 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 NT5DC2Q9H857 520 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 ENAMQ9NRM1 1142 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 STK38LQ9Y2H1 464 aa16.25■□□□□ 0.19
COL7A1-202ENST00000422991 SPTBP11277 2137 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 WDR91A4D1P6 747 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 H3BQF6 201 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 POLR1CO15160 346 aaPredicted RBP16.24■□□□□ 0.19
COL7A1-202ENST00000422991 OR1F1O43749 312 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 NPHS1O60500 1241 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 SRPX2O60687 465 aaPredicted RBP16.24■□□□□ 0.19
COL7A1-202ENST00000422991 CLDN9O95484 217 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 NR1D1P20393 614 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 ARL1P40616 181 aaPredicted RBP16.24■□□□□ 0.19
COL7A1-202ENST00000422991 HNF4AP41235 474 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 ITGA1P56199 1179 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 VSX2P58304 361 aaPredicted RBP16.24■□□□□ 0.19
COL7A1-202ENST00000422991 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.24■□□□□ 0.19
COL7A1-202ENST00000422991 GGTA1PQ4G0N0 100 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 TCTE1Q5JU00 501 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 LETMD1Q6P1Q0 360 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 IGF2-ASQ6U949 168 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 CEACAM20Q6UY09 585 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 GPRIN3Q6ZVF9 776 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 SYVN1Q86TM6 617 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 BPHLQ86WA6 291 aaPredicted RBP16.24■□□□□ 0.19
COL7A1-202ENST00000422991 PPP1R3BQ86XI6 285 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 MYLK4Q86YV6 388 aaPredicted RBP16.24■□□□□ 0.19
COL7A1-202ENST00000422991 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.24■□□□□ 0.19
COL7A1-202ENST00000422991 OR4F6Q8NGB9 312 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 MDM1Q8TC05 714 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 AGAP11Q8TF27 550 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 RERGQ96A58 199 aaPredicted RBP16.24■□□□□ 0.19
COL7A1-202ENST00000422991 CDK15Q96Q40 435 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 PAIP2Q9BPZ3 127 aaKnown RBP16.24■□□□□ 0.19
COL7A1-202ENST00000422991 TRMOQ9BU70 441 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 ZNF225Q9UK10 706 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 RNF11Q9Y3C5 154 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 PCDHGA3Q9Y5H0 932 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 WDFY3Q8IZQ1 3526 aa16.24■□□□□ 0.19
COL7A1-202ENST00000422991 USP24Q9UPU5 2620 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 KMT2BQ9UMN6 2715 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-202ENST00000422991 C9orf172C9J069 976 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 UBFD1O14562 309 aaKnown RBP16.23■□□□□ 0.19
COL7A1-202ENST00000422991 P2RX6O15547 441 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 OR2B3O76000 313 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 TNFSF15O95150 251 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 AHRP35869 848 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 PKNOX1P55347 436 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 ERVPABLB-1P60509 514 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 GPS2Q13227 327 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 RCN2Q14257 317 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 RTP5Q14D33 572 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 RBBP5Q15291 538 aaKnown RBP16.23■□□□□ 0.19
COL7A1-202ENST00000422991 CHI3L2Q15782 390 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 HIST2H2ACQ16777 129 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-202ENST00000422991 DCAF12Q5T6F0 453 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 CES4AQ5XG92 561 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 HIST2H2AA3Q6FI13 130 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 MILR1Q7Z6M3 343 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 LAS2Q8IYD9 372 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 CSNK1A1LQ8N752 337 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 KDF1Q8NAX2 398 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-202ENST00000422991 USP7Q93009 1102 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 UBE2E3Q969T4 207 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 NXPE2Q96DL1 559 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 TM4SF19Q96DZ7 209 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 CNDP1Q96KN2 507 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 MAGEB10Q96LZ2 347 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-202ENST00000422991 TEFMQ96QE5 360 aaKnown RBP16.23■□□□□ 0.19
COL7A1-202ENST00000422991 ZPBPQ9BS86 351 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 ASPSCR1Q9BZE9 553 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 B3GNT4Q9C0J1 378 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 SPRTNQ9H040 489 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-202ENST00000422991 DRC3Q9H069 523 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 TRPS1Q9UHF7 1281 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 ZFP69BQ9UJL9 534 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 SERTAD3Q9UJW9 196 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 ZNF490Q9ULM2 529 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-202ENST00000422991 B3GALT1Q9Y5Z6 326 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 AP1M2Q9Y6Q5 423 aa16.23■□□□□ 0.19
COL7A1-202ENST00000422991 FITM1A5D6W6 292 aa16.22■□□□□ 0.19
COL7A1-202ENST00000422991 H0YIV9 168 aa16.22■□□□□ 0.19
COL7A1-202ENST00000422991 ZSCAN9O15535 394 aaPredicted RBP16.22■□□□□ 0.19
COL7A1-202ENST00000422991 DXOO77932 396 aaKnown RBP16.22■□□□□ 0.19
COL7A1-202ENST00000422991 OR4F21O95013 312 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms