RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CLNKQ7Z7G1 428 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 SYVN1Q86TM6 617 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 MCATQ8IVS2 390 aaKnown RBP6.69□□□□□ -1.34
LIMA1-202ENST00000394943 CHTF18Q8WVB6 975 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 GAL3ST3Q96A11 431 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 NXPE2Q96DL1 559 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 AIF1LQ9BQI0 150 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 DMRT3Q9NQL9 472 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 OCIAD1Q9NX40 245 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 DYRK1BQ9Y463 629 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 PCDHGA11Q9Y5H2 935 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 LOC102723996A0A087X1L8 192 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 A0A0A6YYD5 115 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 CPED1A4D0V7 1026 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 LRIT2A6NDA9 550 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 SLC9B1P1A6NJY1 282 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 C21orf140B9A014 251 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 PLD2O14939 933 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 RSL1D1O76021 490 aaKnown RBP6.69□□□□□ -1.34
LIMA1-202ENST00000394943 CLDN9O95484 217 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 UROSP10746 265 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 SLCO1A2P46721 670 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 HSPA7P48741 367 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 ITGA1P56199 1179 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 SOX8P57073 446 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 MAGOHP61326 146 aaKnown RBP6.69□□□□□ -1.34
LIMA1-202ENST00000394943 SH3BP2P78314 561 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 PRKG2Q13237 762 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 BIKQ13323 160 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 TMTC4Q5T4D3 741 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 LETMD1Q6P1Q0 360 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 CAMKMTQ7Z624 323 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 SPATA6LQ8N4H0 392 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 ADAMTS17Q8TE56 1095 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 TSNARE1Q96NA8 513 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 CMKLR1Q99788 373 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 DPH7Q9BTV6 452 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 MEAF6Q9HAF1 191 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 CD274Q9NZQ7 290 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 ATXN7L1Q9ULK2 861 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-202ENST00000394943 CLDN16Q9Y5I7 305 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 WDR87Q6ZQQ6 2873 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 A0A087WV48 116 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 A0A1B0GTL3 188 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 TMEM120BA0PK00 339 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 KRT87PA6NCN2 255 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 SUPT3HB4E1H0 165 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 KIF1CO43896 1103 aaKnown RBP6.69□□□□□ -1.34
LIMA1-202ENST00000394943 SUPT3HO75486 399 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 MED26O95402 600 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 CDH1P12830 882 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 AMD1P17707 334 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 FRKP42685 505 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-202ENST00000394943 PFKFB4Q16877 469 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 EXOSC6Q5RKV6 272 aaKnown RBP6.69□□□□□ -1.34
LIMA1-202ENST00000394943 OGFOD2Q6N063 350 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 C16orf46Q6P387 395 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 C4orf33Q8N1A6 199 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 KRT78Q8N1N4 520 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 METTL4Q8N3J2 472 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 GBP7Q8N8V2 638 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-202ENST00000394943 NCSTNQ92542 709 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 MS4A6EQ96DS6 147 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 MAGEB18Q96M61 343 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 ASPSCR1Q9BZE9 553 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 ROGDIQ9GZN7 287 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 PRDM7Q9NQW5 492 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 WWOXQ9NZC7 414 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 TBK1Q9UHD2 729 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 TDRKHQ9Y2W6 561 aaKnown RBP6.69□□□□□ -1.34
LIMA1-202ENST00000394943 C4orf51C9J302 202 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 P2RX6O15547 441 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 BSGP35613 385 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 TARDBPQ13148 414 aaKnown RBP eCLIP6.68□□□□□ -1.34
LIMA1-202ENST00000394943 CATSPEREQ5SY80 951 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 FRMPD2BQ6IN97 320 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 ARMC6Q6NXE6 501 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 FAM198BQ6UWH4 519 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 DHRS13Q6UX07 377 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.68□□□□□ -1.34
LIMA1-202ENST00000394943 CAMKVQ8NCB2 501 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 OR7G3Q8NG95 312 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 UTP15Q8TED0 518 aaKnown RBP6.68□□□□□ -1.34
LIMA1-202ENST00000394943 HOXB13Q92826 284 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-202ENST00000394943 AHCYL2Q96HN2 611 aaKnown RBP6.68□□□□□ -1.34
LIMA1-202ENST00000394943 FAR2Q96K12 515 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 TGM7Q96PF1 710 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 OR1F2PQ96R84 312 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 ZNF385DQ9H6B1 395 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 TNFRSF12AQ9NP84 129 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 SLC22A11Q9NSA0 550 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 KCMF1Q9P0J7 381 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 RAP2CQ9Y3L5 183 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 DNAH14Q0VDD8 3507 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 FRYLO94915 3013 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 IGKV3D-11A0A0A0MRZ8 115 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 ISM1B1AKI9 464 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 H0YGG7 62 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 MAGP20916 626 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 ARF3P61204 181 aaPredicted RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms