RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 SLC19A3Q9BZV2 496 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 ZNF639Q9UID6 485 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 CCND3P30281 292 aaPredicted RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 GPC1P35052 558 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 GIPRP48546 466 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 KCNC1P48547 511 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 GBE1Q04446 702 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 DOC2AQ14183 400 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 GRIK5Q16478 980 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 NOXRED1Q6NXP6 359 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 FAM220AQ7Z4H9 259 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 SSX3Q99909 188 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 STARD7Q9NQZ5 370 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 PRG3Q9Y2Y8 225 aaPredicted RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 A8MT66 165 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 CAPN5O15484 640 aaPredicted RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 ADRA1AP35348 466 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 APLP1P51693 650 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 LY6KQ17RY6 165 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 PIH1D2Q8WWB5 315 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 OR2M2Q96R28 347 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 MGME1Q9BQP7 344 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 PRSS23O95084 383 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 NUDT14O95848 222 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 TRAM2Q15035 370 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 YAF2Q8IY57 180 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 ZNF321PQ8N8H1 164 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 JAM3Q9BX67 310 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 SUV39H2Q9H5I1 410 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 PLIN5Q00G26 463 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 IL1RL1Q01638 556 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 CRYZQ08257 329 aaKnown RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 RAD1O60671 282 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 ALOX12P18054 663 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 BDNFP23560 247 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 SNTB2Q13425 540 aaKnown RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 LRIF1Q5T3J3 769 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 ZNF671Q8TAW3 534 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 ZSCAN18Q8TBC5 510 aaPredicted RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 DDX17Q92841 729 aaKnown RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 OCLNQ16625 522 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 GPR158Q5T848 1215 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 FAM83HQ6ZRV2 1179 aaPredicted RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 OR56B4Q8NH76 319 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 SLC41A3Q96GZ6 507 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 PTGFRNQ9P2B2 879 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 ICKQ9UPZ9 632 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 UPP1Q16831 310 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 WDR45BQ5MNZ6 344 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 ZNF517Q6ZMY9 492 aaPredicted RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 OR6C2Q9NZP2 312 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 HCN3Q9P1Z3 774 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 P2RX2Q9UBL9 471 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 NUP50Q9UKX7 468 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 SLC35G6P0C7Q6 338 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 TBC1D10BQ4KMP7 808 aaPredicted RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 KCTD4Q8WVF5 259 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 ZNF558Q96NG5 402 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 DCSTAMPQ9H295 470 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 ANKRD61A6NGH8 418 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 OR2T1O43869 369 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 SOX15O60248 233 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 CKMP06732 381 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 GRK5P34947 590 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 MAPK12P53778 367 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 RPLP0P6Q8NHW5 317 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 HMX1Q9NP08 348 aaPredicted RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 PCDHGA7Q9Y5G6 932 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 RAP2BP61225 183 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 FAM174BQ3ZCQ3 159 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 CCDC28AQ8IWP9 274 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 CARFQ8N187 725 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 TTC16Q8NEE8 873 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 LYARQ9NX58 379 aaKnown RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 CASKO14936 926 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 MUSKO15146 869 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 PLK5Q496M5 336 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 RERGQ96A58 199 aaPredicted RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 NFKBIL1Q9UBC1 381 aaPredicted RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 PGK1P00558 417 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 SEPHS1P49903 392 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 ZNF792Q3KQV3 632 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 C12orf29Q8N999 325 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 TMEM190Q8WZ59 177 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 PCDHB9Q9Y5E1 797 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 KMOO15229 486 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 FAM189BP81408 668 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 TSPAN33Q86UF1 283 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 PREBQ9HCU5 417 aa4.79□□□□□ -1.64
PCDH9-201ENST00000377861 PDP1Q9P0J1 537 aaPredicted RBP4.79□□□□□ -1.64
PCDH9-201ENST00000377861 TBX19O60806 448 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 NFATC1O95644 943 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 MZF1P28698 734 aaPredicted RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 SEMA3BQ13214 749 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 HSF5Q4G112 596 aaPredicted RBP4.78□□□□□ -1.64
PCDH9-201ENST00000377861 REP15Q6BDI9 236 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 NUP54Q7Z3B4 507 aa4.78□□□□□ -1.64
PCDH9-201ENST00000377861 OR13F1Q8NGS4 319 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms