RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 NKIRAS1Q9NYS0 192 aa13.29□□□□□ -0.28
TPM3-211ENST00000368531 FOXJ2Q9P0K8 574 aa13.29□□□□□ -0.28
TPM3-211ENST00000368531 RNF11Q9Y3C5 154 aa13.29□□□□□ -0.28
TPM3-211ENST00000368531 PCDHGA4Q9Y5G9 962 aa13.29□□□□□ -0.28
TPM3-211ENST00000368531 A0A1B0GTL3 188 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 P2RX6O15547 441 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 ZNF749O43361 778 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 SRPX2O60687 465 aaPredicted RBP13.28□□□□□ -0.28
TPM3-211ENST00000368531 SCRG1O75711 98 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 WFS1O76024 890 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 KIAA0754O94854 1291 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 OR4F21O95013 312 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 CLDN9O95484 217 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 ZNF28P17035 718 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 CXCR2P25025 360 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 ASPHQ12797 758 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 LAPTM5Q13571 262 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 CPSF6Q16630 551 aaKnown RBP eCLIP13.28□□□□□ -0.285e-7■□□□□ 10.7
TPM3-211ENST00000368531 HIST2H2ACQ16777 129 aaPredicted RBP13.28□□□□□ -0.28
TPM3-211ENST00000368531 HKDC1Q2TB90 917 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 PAGE2BQ5JRK9 111 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 HIST2H2AA3Q6FI13 130 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 ADNP2Q6IQ32 1131 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 TMIGD1Q6UXZ0 262 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.28□□□□□ -0.28
TPM3-211ENST00000368531 CSNK1A1LQ8N752 337 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 ANKRD53Q8N9V6 530 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 OR4F6Q8NGB9 312 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 PPP1R14CQ8TAE6 165 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 MDM1Q8TC05 714 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 MTFMTQ96DP5 389 aaKnown RBP13.28□□□□□ -0.28
TPM3-211ENST00000368531 EFCAB11Q9BUY7 163 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 DDA1Q9BW61 102 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 ASPSCR1Q9BZE9 553 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 ULBP3Q9BZM4 244 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 EHD1Q9H4M9 534 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 ZNF490Q9ULM2 529 aaPredicted RBP13.28□□□□□ -0.28
TPM3-211ENST00000368531 SCN3AQ9NY46 2000 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 SPEGQ15772 3267 aa13.28□□□□□ -0.28
TPM3-211ENST00000368531 TEX51A0A1B0GUA7 166 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 ANKDD1BA6NHY2 528 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 FFAR3O14843 346 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 GPR42O15529 346 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 ZSCAN9O15535 394 aaPredicted RBP13.27□□□□□ -0.29
TPM3-211ENST00000368531 OTCP00480 354 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 MSL3P1P0C860 447 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 SCTRP47872 440 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 WDR4P57081 412 aaKnown RBP13.27□□□□□ -0.29
TPM3-211ENST00000368531 ERVPABLB-1P60509 514 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 SHC2P98077 582 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 RELAQ04206 551 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 TRAF3Q13114 568 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 DDX39BQ13838 428 aaKnown RBP13.27□□□□□ -0.29
TPM3-211ENST00000368531 TBCCQ15814 346 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 SGO1Q5FBB7 561 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 TCTE1Q5JU00 501 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 LIPJQ5W064 366 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 TTC19Q6DKK2 380 aaPredicted RBP13.27□□□□□ -0.29
TPM3-211ENST00000368531 GRHL2Q6ISB3 625 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 LETMD1Q6P1Q0 360 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 MED27Q6P2C8 311 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 VN1R4Q7Z5H5 301 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 SYVN1Q86TM6 617 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 ASPGQ86U10 573 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 BPHLQ86WA6 291 aaPredicted RBP13.27□□□□□ -0.29
TPM3-211ENST00000368531 ZFAND4Q86XD8 727 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 LSMEM2Q8N112 164 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 TTC29Q8NA56 475 aaPredicted RBP13.27□□□□□ -0.29
TPM3-211ENST00000368531 OR8K5Q8NH50 307 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 SLC13A3Q8WWT9 602 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 SREK1Q8WXA9 508 aaKnown RBP13.27□□□□□ -0.29
TPM3-211ENST00000368531 CLIP3Q96DZ5 547 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 THAP11Q96EK4 314 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 WDR34Q96EX3 536 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 DRC3Q9H069 523 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 ACTR5Q9H9F9 607 aaPredicted RBP13.27□□□□□ -0.29
TPM3-211ENST00000368531 MID1IP1Q9NPA3 183 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 ASCL3Q9NQ33 180 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 NDOR1Q9UHB4 597 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 SPTBN4Q9H254 2564 aa13.27□□□□□ -0.29
TPM3-211ENST00000368531 DCHS1Q96JQ0 3298 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 KCNE1BA0A087WTH5 132 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 HYKKA2RU49 373 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 CDRT15L2A8MXV6 281 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 NVLO15381 856 aaKnown RBP13.26□□□□□ -0.29
TPM3-211ENST00000368531 NDUFS4O43181 175 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 SH3BGRLO75368 114 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 STK17BO94768 372 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 MLYCDO95822 493 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 DHRS4L1P0CG22 281 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 BGNP21810 368 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 ALAS2P22557 587 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 HNF4AP41235 474 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 CASP2P42575 452 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 GRM7Q14831 915 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 ZRSR2Q15696 482 aaKnown RBP13.26□□□□□ -0.29
TPM3-211ENST00000368531 CHI3L2Q15782 390 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.26□□□□□ -0.29
TPM3-211ENST00000368531 SDK2Q58EX2 2172 aa13.26□□□□□ -0.29
TPM3-211ENST00000368531 HSP90B2PQ58FF3 399 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms