RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 DSC1Q08554 894 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 DSC3Q14574 896 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 MED22Q15528 200 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 RIT1Q92963 219 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 SEC61A2Q9H9S3 476 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 MED31Q9Y3C7 131 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 ZNF726A6NNF4 738 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 CD1DP15813 335 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 ACRV1P26436 265 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 NUP62P37198 522 aaPredicted RBP11.23□□□□□ -0.61
SYNE1-204ENST00000367248 CCR10P46092 362 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 GALK1P51570 392 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 ZNF678Q5SXM1 525 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 SNRNP27Q8WVK2 155 aaKnown RBP11.23□□□□□ -0.61
SYNE1-204ENST00000367248 IL17FQ96PD4 163 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 MARCH7Q9H992 704 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 PLEKHA1Q9HB21 404 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 POU2F3Q9UKI9 436 aa11.23□□□□□ -0.61
SYNE1-204ENST00000367248 AQP12BA6NM10 295 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 TSC22D2O75157 780 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 CXCR1P25024 350 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 GRK6P43250 576 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 CAMK1Q14012 370 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 SCARB2Q14108 478 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 PCLAFQ15004 111 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 AQP12AQ8IXF9 295 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 UTS2RQ9UKP6 389 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 PLCL2Q9UPR0 1127 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 CFL2Q9Y281 166 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 NUMBLQ9Y6R0 609 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 BCKDKO14874 412 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 TLX3O43711 291 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 OR2B3O76000 313 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 AGR2O95994 175 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 DBTP11182 482 aaKnown RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 EIF1AXP47813 144 aaKnown RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 LRP8Q14114 963 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 PLD6Q8N2A8 252 aaKnown RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 SETD6Q8TBK2 473 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 RTP4Q96DX8 246 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 SLC35A5Q9BS91 424 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 ZNF304Q9HCX3 659 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 CRNNQ9UBG3 495 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 LTBP4Q8N2S1 1624 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 DCNP07585 359 aaKnown RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 ATP5A1P25705 553 aaKnown RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 RPS13P62277 151 aaKnown RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 FAM214AQ32MH5 1076 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 PHOSPHO1Q8TCT1 267 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 MPP4Q96JB8 637 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 GFM1Q96RP9 751 aaKnown RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 C17orf62Q9BQA9 187 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 HERPUD2Q9BSE4 406 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 SLC17A9Q9BYT1 436 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 SERINC1Q9NRX5 453 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 A0A075B6Q4 140 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 ELOA3DA6NLF2 546 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 ARHGEF33A8MVX0 844 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 G6PDP11413 515 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 ALOX12P18054 663 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 SLC6A9P48067 706 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 DNASE1L1P49184 302 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 CDKN3Q16667 212 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 ELOA3BQ3SY89 546 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 ZNF311Q5JNZ3 666 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 TMEM214Q6NUQ4 689 aaKnown RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 RPS27LQ71UM5 84 aaKnown RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 CXXC5Q7LFL8 322 aaKnown RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 SVOPLQ8N434 492 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 ELOA3Q8NG57 546 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 CAMK1GQ96NX5 476 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 FBRSL1Q9HCM7 1045 aaKnown RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 SCN11AQ9UI33 1791 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 A0A0U1RQS6 177 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 PSMD11O00231 422 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 GADD45GO95257 159 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 ZBTB11O95625 1053 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 ALDOAP04075 364 aaKnown RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 RAP2AP10114 183 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 MYCLP1P12525 358 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-204ENST00000367248 EMX2Q04743 252 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 DMWDQ09019 674 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 FAM26DQ5JW98 314 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 RTL10Q7L3V2 364 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 LRTOMTQ8WZ04 291 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 SEC14L1Q92503 715 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 ZNF382Q96SR6 550 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 SLC46A2Q9BY10 475 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 EPB41L1Q9H4G0 881 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 TRIM39Q9HCM9 518 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 DNAJB9Q9UBS3 223 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 FZD4Q9ULV1 537 aa11.22□□□□□ -0.61
SYNE1-204ENST00000367248 C2orf74A8MZ97 194 aa11.21□□□□□ -0.61
SYNE1-204ENST00000367248 H3BSH0 61 aa11.21□□□□□ -0.61
SYNE1-204ENST00000367248 MATN2O00339 956 aa11.21□□□□□ -0.61
SYNE1-204ENST00000367248 ADAM12O43184 909 aa11.21□□□□□ -0.61
SYNE1-204ENST00000367248 HRH2P25021 359 aa11.21□□□□□ -0.61
SYNE1-204ENST00000367248 MADCAM1Q13477 382 aa11.21□□□□□ -0.61
SYNE1-204ENST00000367248 MPP7Q5T2T1 576 aa11.21□□□□□ -0.61
SYNE1-204ENST00000367248 OAFQ86UD1 273 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms