RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 S100A3P33764 101 aa8.84□□□□□ -1
UPF2-202ENST00000357604 IRF9Q00978 393 aa8.84□□□□□ -1
UPF2-202ENST00000357604 ZNF155Q12901 538 aaPredicted RBP8.84□□□□□ -1
UPF2-202ENST00000357604 SERTAD2Q14140 314 aa8.84□□□□□ -1
UPF2-202ENST00000357604 DUS1LQ6P1R4 473 aaKnown RBP8.84□□□□□ -1
UPF2-202ENST00000357604 OGFOD3Q6PK18 319 aa8.84□□□□□ -1
UPF2-202ENST00000357604 DHRS13Q6UX07 377 aa8.84□□□□□ -1
UPF2-202ENST00000357604 IL17FQ96PD4 163 aa8.84□□□□□ -1
UPF2-202ENST00000357604 NPLQ9BXD5 320 aaPredicted RBP8.84□□□□□ -1
UPF2-202ENST00000357604 ERVK-11Q9UQG0 969 aa8.84□□□□□ -1
UPF2-202ENST00000357604 SNX8Q9Y5X2 465 aa8.84□□□□□ -1
UPF2-202ENST00000357604 B4E171 279 aa8.83□□□□□ -1
UPF2-202ENST00000357604 RAD1O60671 282 aa8.83□□□□□ -1
UPF2-202ENST00000357604 CPSF4O95639 269 aaKnown RBP8.83□□□□□ -1
UPF2-202ENST00000357604 IDO1P14902 403 aa8.83□□□□□ -1
UPF2-202ENST00000357604 TSPAN7P41732 249 aa8.83□□□□□ -1
UPF2-202ENST00000357604 STX5Q13190 355 aa8.83□□□□□ -1
UPF2-202ENST00000357604 OR4C11Q6IEV9 310 aa8.83□□□□□ -1
UPF2-202ENST00000357604 ZNF382Q96SR6 550 aa8.83□□□□□ -1
UPF2-202ENST00000357604 OLFM1Q99784 485 aa8.83□□□□□ -1
UPF2-202ENST00000357604 KLHL25Q9H0H3 589 aa8.83□□□□□ -1
UPF2-202ENST00000357604 VPS29Q9UBQ0 182 aa8.83□□□□□ -1
UPF2-202ENST00000357604 PTRH2Q9Y3E5 179 aaKnown RBP8.83□□□□□ -1
UPF2-202ENST00000357604 TRAF6Q9Y4K3 522 aa8.83□□□□□ -1
UPF2-202ENST00000357604 IGHV1OR21-1A0A087WYE8 117 aa8.83□□□□□ -1
UPF2-202ENST00000357604 A0A1B0GX78 115 aa8.83□□□□□ -1
UPF2-202ENST00000357604 PROB1E7EW31 1015 aa8.83□□□□□ -1
UPF2-202ENST00000357604 AGR2O95994 175 aa8.83□□□□□ -1
UPF2-202ENST00000357604 WNT1P04628 370 aa8.83□□□□□ -1
UPF2-202ENST00000357604 ANXA4P09525 319 aaPredicted RBP8.83□□□□□ -1
UPF2-202ENST00000357604 NR2F6P10588 404 aa8.83□□□□□ -1
UPF2-202ENST00000357604 IL12BP29460 328 aa8.83□□□□□ -1
UPF2-202ENST00000357604 REEP5Q00765 189 aa8.83□□□□□ -1
UPF2-202ENST00000357604 SQLEQ14534 574 aa8.83□□□□□ -1
UPF2-202ENST00000357604 C16orf89Q6UX73 402 aa8.83□□□□□ -1
UPF2-202ENST00000357604 KLHL29Q96CT2 875 aa8.83□□□□□ -1
UPF2-202ENST00000357604 DDA1Q9BW61 102 aa8.83□□□□□ -1
UPF2-202ENST00000357604 POLR1BQ9H9Y6 1135 aa8.83□□□□□ -1
UPF2-202ENST00000357604 BRF2Q9HAW0 419 aa8.83□□□□□ -1
UPF2-202ENST00000357604 MLXIPLQ9NP71 852 aa8.83□□□□□ -1
UPF2-202ENST00000357604 FSCN3Q9NQT6 498 aa8.83□□□□□ -1
UPF2-202ENST00000357604 EURLQ9NYK6 297 aa8.83□□□□□ -1
UPF2-202ENST00000357604 ZFP69BQ9UJL9 534 aa8.83□□□□□ -1
UPF2-202ENST00000357604 A8MT66 165 aa8.83□□□□□ -1
UPF2-202ENST00000357604 EBAG9O00559 213 aa8.83□□□□□ -1
UPF2-202ENST00000357604 MPIP34949 423 aa8.83□□□□□ -1
UPF2-202ENST00000357604 MDH1P40925 334 aaKnown RBP8.83□□□□□ -1
UPF2-202ENST00000357604 RPL38P63173 70 aaKnown RBP8.83□□□□□ -1
UPF2-202ENST00000357604 TXNL4AP83876 142 aaKnown RBP8.83□□□□□ -1
UPF2-202ENST00000357604 FZD5Q13467 585 aa8.83□□□□□ -1
UPF2-202ENST00000357604 FAAH2Q6GMR7 532 aa8.83□□□□□ -1
UPF2-202ENST00000357604 TRIM73Q86UV7 250 aa8.83□□□□□ -1
UPF2-202ENST00000357604 SLC22A8Q8TCC7 542 aa8.83□□□□□ -1
UPF2-202ENST00000357604 SCARF2Q96GP6 870 aaPredicted RBP8.83□□□□□ -1
UPF2-202ENST00000357604 FAM117AQ9C073 453 aa8.83□□□□□ -1
UPF2-202ENST00000357604 OXSMQ9NWU1 459 aa8.83□□□□□ -1
UPF2-202ENST00000357604 C1orf109Q9NX04 203 aa8.83□□□□□ -1
UPF2-202ENST00000357604 SPAARA0A1B0GVQ0 90 aa8.83□□□□□ -1
UPF2-202ENST00000357604 DCDC2BA2VCK2 349 aa8.83□□□□□ -1
UPF2-202ENST00000357604 PDPK1O15530 556 aa8.83□□□□□ -1
UPF2-202ENST00000357604 PLIN3O60664 434 aa8.83□□□□□ -1
UPF2-202ENST00000357604 HNRNPCL1O60812 293 aaKnown RBP8.83□□□□□ -1
UPF2-202ENST00000357604 CLEC3AO75596 197 aa8.83□□□□□ -1
UPF2-202ENST00000357604 ATP5HO75947 161 aa8.83□□□□□ -1
UPF2-202ENST00000357604 ALOX12P18054 663 aa8.83□□□□□ -1
UPF2-202ENST00000357604 TRA2BP62995 288 aaKnown RBP8.83□□□□□ -1
UPF2-202ENST00000357604 SF3B4Q15427 424 aaKnown RBP eCLIP8.83□□□□□ -11e-6■■■□□ 19.1
UPF2-202ENST00000357604 GSTA3Q16772 222 aa8.83□□□□□ -1
UPF2-202ENST00000357604 TECRLQ5HYJ1 363 aa8.83□□□□□ -1
UPF2-202ENST00000357604 CPTPQ5TA50 214 aa8.83□□□□□ -1
UPF2-202ENST00000357604 OR2L3Q8NG85 312 aa8.83□□□□□ -1
UPF2-202ENST00000357604 CATSPER2Q96P56 530 aa8.83□□□□□ -1
UPF2-202ENST00000357604 SPATA5L1Q9BVQ7 753 aa8.83□□□□□ -1
UPF2-202ENST00000357604 BRINP2Q9C0B6 783 aa8.83□□□□□ -1
UPF2-202ENST00000357604 EXD2Q9NVH0 621 aa8.83□□□□□ -1
UPF2-202ENST00000357604 PRODH2Q9UF12 536 aa8.83□□□□□ -1
UPF2-202ENST00000357604 CAPN7Q9Y6W3 813 aa8.83□□□□□ -1
UPF2-202ENST00000357604 TCP11X1B4DZS4 312 aa8.82□□□□□ -1
UPF2-202ENST00000357604 CCR10P46092 362 aa8.82□□□□□ -1
UPF2-202ENST00000357604 NAGLUP54802 743 aa8.82□□□□□ -1
UPF2-202ENST00000357604 PRDX1Q06830 199 aaKnown RBP8.82□□□□□ -1
UPF2-202ENST00000357604 DPY19L1Q2PZI1 675 aa8.82□□□□□ -1
UPF2-202ENST00000357604 OR52E8Q6IFG1 317 aa8.82□□□□□ -1
UPF2-202ENST00000357604 FAM131CQ96AQ9 280 aa8.82□□□□□ -1
UPF2-202ENST00000357604 RHBDF1Q96CC6 855 aa8.82□□□□□ -1
UPF2-202ENST00000357604 MVB12AQ96EY5 273 aa8.82□□□□□ -1
UPF2-202ENST00000357604 RAB33BQ9H082 229 aa8.82□□□□□ -1
UPF2-202ENST00000357604 TCEAL2Q9H3H9 227 aaPredicted RBP8.82□□□□□ -1
UPF2-202ENST00000357604 ICKQ9UPZ9 632 aa8.82□□□□□ -1
UPF2-202ENST00000357604 MAN2B2Q9Y2E5 1009 aa8.82□□□□□ -1
UPF2-202ENST00000357604 HNRNPH2P55795 449 aaKnown RBP8.82□□□□□ -1
UPF2-202ENST00000357604 TBL3Q12788 808 aaKnown RBP8.82□□□□□ -1
UPF2-202ENST00000357604 C1orf189Q5VU69 101 aa8.82□□□□□ -1
UPF2-202ENST00000357604 PAOXQ6QHF9 649 aa8.82□□□□□ -1
UPF2-202ENST00000357604 SLC22A18ASQ8N1D0 253 aa8.82□□□□□ -1
UPF2-202ENST00000357604 TWIST2Q8WVJ9 160 aa8.82□□□□□ -1
UPF2-202ENST00000357604 CMTM5Q96DZ9 223 aa8.82□□□□□ -1
UPF2-202ENST00000357604 LIN37Q96GY3 246 aaPredicted RBP8.82□□□□□ -1
UPF2-202ENST00000357604 PPP1R36Q96LQ0 422 aa8.82□□□□□ -1
UPF2-202ENST00000357604 LRRC37BQ96QE4 947 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms