RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NUDT15Q9NV35 164 aa18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 FAM120CQ9NX05 1096 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-202ENST00000356786 H3BMQ9 156 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 SLC1A7O00341 560 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 ARL6IP5O75915 188 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 BMP2P12643 396 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 SLBPQ14493 270 aaKnown RBP eCLIP18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 TECRLQ5HYJ1 363 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 C10orf62Q5T681 223 aaPredicted RBP18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 RAB12Q6IQ22 244 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 NCSTNQ92542 709 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 COG8Q96MW5 612 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 NPY6RQ99463 290 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 WRAP53Q9BUR4 548 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 RHCGQ9UBD6 479 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 ZNF510Q9Y2H8 683 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 RNF11Q9Y3C5 154 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 SRPRAP08240 638 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 HTR1BP28222 390 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 HOXD12P35452 270 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 OPRL1P41146 370 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 ZDHHC14Q8IZN3 488 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 TRIM36Q9NQ86 728 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 FARSBQ9NSD9 589 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 SLC35F4A4IF30 521 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 MLLT6P55198 1093 aaPredicted RBP18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 TIGD5Q53EQ6 642 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 CYP4V2Q6ZWL3 525 aaPredicted RBP18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 OR8J3Q8NGG0 315 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 SEZ6LQ9BYH1 1024 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 TRPV4Q9HBA0 871 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 TLR6Q9Y2C9 796 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 SPATA31D3P0C874 917 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 CKMT1AP12532 417 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 PTPRCAPQ14761 206 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 SHQ1Q6PI26 577 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 SPATA31D4Q6ZUB0 917 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 NXPE1Q8N323 547 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 ZNF676Q8N7Q3 588 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 MAPK15Q8TD08 544 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 LHPPQ9H008 270 aa18.97■□□□□ 0.63
CCDC88B-202ENST00000356786 TEX46H3BTG2 121 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 HCRTO43612 131 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 KIAA0513O60268 411 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 OXSR1O95747 527 aaPredicted RBP18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 TFPIP10646 304 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 HTR2BP41595 481 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 ETV4P43268 484 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 OR1E2P47887 323 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 GOLM1Q8NBJ4 401 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 TMIEQ8NEW7 156 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 EFCAB11Q9BUY7 163 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 MEAF6Q9HAF1 191 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 CD93Q9NPY3 652 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 PTGDR2Q9Y5Y4 395 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 LRRC73Q5JTD7 316 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 CEACAM20Q6UY09 585 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 CYS1Q717R9 158 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 LYSMD3Q7Z3D4 306 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 CREB3L1Q96BA8 519 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 SMURF1Q9HCE7 757 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 SIX4Q9UIU6 781 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 ASB3Q9Y575 518 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 KRBA1A5PL33 1030 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 ITGA10O75578 1167 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 CELP19835 753 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 LIPKQ5VXJ0 399 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 PAQR7Q86WK9 346 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 ZNF548Q8NEK5 533 aaPredicted RBP18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 KCTD13Q8WZ19 329 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 CPNE5Q9HCH3 593 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 PCDHGB7Q9Y5F8 929 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 SNED1Q8TER0 1413 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 NRP1O14786 923 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 ASGR1P07306 291 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 ALPIP09923 528 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 PTCHD3Q3KNS1 767 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 LRRC70Q7Z2Q7 622 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 OR13J1Q8NGT2 312 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 LGR4Q9BXB1 951 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 P2RX2Q9UBL9 471 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 EXTL2Q9UBQ6 330 aa18.96■□□□□ 0.63
CCDC88B-202ENST00000356786 CACNB4O00305 520 aaPredicted RBP18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 EBLN1P0CF75 366 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 ACVRL1P37023 503 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 AP1S2P56377 157 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 CREMQ03060 361 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 NPAS3Q8IXF0 933 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 SLC7A5P1Q8MH63 180 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 SDR16C5Q8N3Y7 309 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 PHC3Q8NDX5 983 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 NLGN2Q8NFZ4 835 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 TP63Q9H3D4 680 aaPredicted RBP18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 ZDHHC7Q9NXF8 308 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 ZNF451Q9Y4E5 1061 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 GNB5O14775 395 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 VIPP01282 170 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 DHRS4L1P0CG22 281 aa18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 NCBP2P52298 156 aaKnown RBP eCLIP18.95■□□□□ 0.62
CCDC88B-202ENST00000356786 ZNF367Q7RTV3 350 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms