RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ACVRL1P37023 503 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 SOX3P41225 446 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 LHX1P48742 406 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 CLCN7P51798 805 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 KCNJ10P78508 379 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 HSPA14Q0VDF9 509 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 MAD2L1Q13257 205 aaPredicted RBP6.57□□□□□ -1.36
VPS39-202ENST00000348544 VEPH1Q14D04 833 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 EIF4HQ15056 248 aaKnown RBP6.57□□□□□ -1.36
VPS39-202ENST00000348544 PTPRRQ15256 657 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 TJAP1Q5JTD0 557 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 TWF2Q6IBS0 349 aaKnown RBP6.57□□□□□ -1.36
VPS39-202ENST00000348544 GPR155Q7Z3F1 870 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 TRIM46Q7Z4K8 759 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 ABI3BPQ7Z7G0 1075 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 SERPINA11Q86U17 422 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 IGSF8Q969P0 613 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 MTFMTQ96DP5 389 aaKnown RBP6.57□□□□□ -1.36
VPS39-202ENST00000348544 OMA1Q96E52 524 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 TPD52L3Q96J77 140 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 TSSK3Q96PN8 268 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 NIPSNAP1Q9BPW8 284 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 PAAF1Q9BRP4 392 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 CDCA4Q9BXL8 241 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 FAM83DQ9H4H8 585 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 NIPAL2Q9H841 368 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 ZNF556Q9HAH1 456 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 EXOSC4Q9NPD3 245 aaKnown RBP6.57□□□□□ -1.36
VPS39-202ENST00000348544 COQ3Q9NZJ6 369 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 EIF3KQ9UBQ5 218 aaKnown RBP6.57□□□□□ -1.36
VPS39-202ENST00000348544 KLHL21Q9UJP4 597 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 FNDC3AQ9Y2H6 1198 aaKnown RBP6.57□□□□□ -1.36
VPS39-202ENST00000348544 ALG5Q9Y673 324 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 SLC28A1O00337 649 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 SCAMP3O14828 347 aaKnown RBP6.56□□□□□ -1.36
VPS39-202ENST00000348544 GPR182O15218 404 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 FFAR2O15552 330 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 OR2B3O76000 313 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 LRATO95237 230 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 ACADMP11310 421 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 RHOQP17081 205 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 DDX5P17844 614 aaKnown RBP6.56□□□□□ -1.36
VPS39-202ENST00000348544 ADCYAP1R1P41586 468 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 CLDN8P56748 225 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 RPS14P62263 151 aaKnown RBP6.56□□□□□ -1.36
VPS39-202ENST00000348544 GPR19Q15760 415 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 TATDN3Q17R31 274 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 TIMM50Q3ZCQ8 353 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 LRRC66Q68CR7 880 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 OVOS1Q6IE37 1185 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 FAM131AQ6UXB0 335 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 DLK2Q6UY11 383 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 CREB3L2Q70SY1 520 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 ZNF767PQ75MW2 155 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 LRRTM3Q86VH5 581 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.56□□□□□ -1.36
VPS39-202ENST00000348544 DNAJB8Q8NHS0 232 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 GPR152Q8TDT2 470 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 UTP15Q8TED0 518 aaKnown RBP6.56□□□□□ -1.36
VPS39-202ENST00000348544 C1QTNF7Q9BXJ2 289 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 ACPTQ9BZG2 426 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 POLR1EQ9GZS1 481 aaKnown RBP6.56□□□□□ -1.36
VPS39-202ENST00000348544 ABCB9Q9NP78 766 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 ABCC13Q9NSE7 274 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 TMEM248Q9NWD8 314 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 FNIP2Q9P278 1114 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 RBPJLQ9UBG7 517 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 TEKT2Q9UIF3 430 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 FKBPLQ9UIM3 349 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 RPS6KA6Q9UK32 745 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 CMAHPQ9Y471 501 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 HSPB11Q9Y547 144 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 FADS2P1A8MWK0 482 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 LOC730098B7Z3J9 87 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 FZD9O00144 591 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 CLIC1O00299 241 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 WWP2O00308 870 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 RFXANKO14593 260 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 ARHGEF9O43307 516 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 ULK1O75385 1050 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 EPOP01588 193 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 CYP17A1P05093 508 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 GSTM1P09488 218 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 NUDT7P0C024 238 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 CTRB1P17538 263 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 ENGP17813 658 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 TNFRSF1BP20333 461 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 ENPP1P22413 925 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 CPN2P22792 545 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 GPC1P35052 558 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 CRYBB2P43320 205 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 BNC1Q01954 994 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 CACNB2Q08289 660 aaPredicted RBP6.56□□□□□ -1.36
VPS39-202ENST00000348544 PPIGQ13427 754 aaKnown RBP eCLIP6.56□□□□□ -1.362e-6■■■■□ 20.6
VPS39-202ENST00000348544 VGLL4Q14135 290 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 LARS2Q15031 903 aaKnown RBP6.56□□□□□ -1.36
VPS39-202ENST00000348544 MS4A13Q5J8X5 152 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 TIGD3Q6B0B8 471 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 CTRB2Q6GPI1 263 aa6.56□□□□□ -1.36
VPS39-202ENST00000348544 SLC44A2Q8IWA5 706 aaPredicted RBP6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms