RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PCDHGA11Q9Y5H2 935 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 IQCF5A8MTL0 148 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 MCIDASD6RGH6 385 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 AHSGP02765 367 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 EPHX1P07099 455 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 GSTM3P21266 225 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 PSMA6P60900 246 aaKnown RBP11.18□□□□□ -0.62
VPS39-201ENST00000318006 SEMA3AQ14563 771 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 ALG11Q2TAA5 492 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 FAM182AQ5T1J6 154 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 KIAA1161Q6NSJ0 714 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 C15orf39Q6ZRI6 1047 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 IGDCC3Q8IVU1 814 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 CHERPQ8IWX8 916 aaKnown RBP11.18□□□□□ -0.62
VPS39-201ENST00000318006 ARMC10Q8N2F6 343 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 OXR1Q8N573 874 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 THAP6Q8TBB0 222 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 ACOT12Q8WYK0 555 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 CCDC32Q9BV29 185 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 SLA2Q9H6Q3 261 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 IFT46Q9NQC8 304 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 ZDHHC7Q9NXF8 308 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 ERVK-18Q9QC07 812 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 FZD4Q9ULV1 537 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 EDARQ9UNE0 448 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 YIPF1Q9Y548 306 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 DFNA5O60443 496 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 ECI2O75521 394 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 DNASE1L1P49184 302 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 HNRNPFP52597 415 aaKnown RBP11.18□□□□□ -0.62
VPS39-201ENST00000318006 PIGFQ07326 219 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 HNRNPA0Q13151 305 aaKnown RBP11.18□□□□□ -0.62
VPS39-201ENST00000318006 SMYD5Q6GMV2 418 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 DUS1LQ6P1R4 473 aaKnown RBP11.18□□□□□ -0.62
VPS39-201ENST00000318006 DCDC5Q6ZRR9 648 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 RGL4Q8IZJ4 473 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 GHDCQ8N2G8 530 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 RERGQ96A58 199 aaPredicted RBP11.18□□□□□ -0.62
VPS39-201ENST00000318006 ZSWIM3Q96MP5 696 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 CAMK1GQ96NX5 476 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 BCL7BQ9BQE9 202 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 AIFM2Q9BRQ8 373 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 CRTAC1Q9NQ79 661 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 OR51F1A6NGY5 319 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 ZNF487B1APH4 448 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 GBX2P52951 348 aaPredicted RBP11.18□□□□□ -0.62
VPS39-201ENST00000318006 DNAJB13P59910 316 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 CAP1Q01518 475 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 HMGCS1Q01581 520 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 SMARCD3Q6STE5 483 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 PAQR3Q6TCH7 311 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 GET4Q7L5D6 327 aaPredicted RBP11.18□□□□□ -0.62
VPS39-201ENST00000318006 RANBP3LQ86VV4 465 aaPredicted RBP11.18□□□□□ -0.62
VPS39-201ENST00000318006 SLC7A5P1Q8MH63 180 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 CNIH3Q8TBE1 160 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 NRG4Q8WWG1 115 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 NCSTNQ92542 709 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 CDK15Q96Q40 435 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 UCK2Q9BZX2 261 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 SACM1LQ9NTJ5 587 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 DUS2Q9NX74 493 aaKnown RBP11.18□□□□□ -0.62
VPS39-201ENST00000318006 A0A075B6Q4 140 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 NUAK1O60285 661 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 MT-ND2P03891 347 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 DNASE1P24855 282 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 PDHA2P29803 388 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 CD40LGP29965 261 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 TLE2Q04725 743 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 ZNF33AQ06730 810 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 TMC8Q8IU68 726 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 COQ8AQ8NI60 647 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 HSH2DQ96JZ2 352 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 GPER1Q99527 375 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 TTLL2Q9BWV7 592 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 TXLNGYQ9BZA5 131 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 BRD7Q9NPI1 651 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 SLC39A1Q9NY26 324 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 PCDHGB1Q9Y5G3 927 aa11.18□□□□□ -0.62
VPS39-201ENST00000318006 TRAV6A0A075B6T7 132 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 PRORSD1PA6NEY8 169 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 M0R036 132 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 FFAR2O15552 330 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 ITGA10O75578 1167 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 ARL6IP5O75915 188 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 PRAMEF12O95522 483 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 CD2P06729 351 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 C8GP07360 202 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 T-ENOLP0DO92 83 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 HK1P19367 917 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 EIF2S3P41091 472 aaKnown RBP11.17□□□□□ -0.62
VPS39-201ENST00000318006 CSKP41240 450 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 BORAQ6PGQ7 559 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 PAQR7Q86WK9 346 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 PHC3Q8NDX5 983 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 OR10H5Q8NGA6 315 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 S100PBPQ96BU1 408 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 CDKN2AIPNLQ96HQ2 116 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 TMEM175Q9BSA9 504 aa11.17□□□□□ -0.62
VPS39-201ENST00000318006 WRAP53Q9BUR4 548 aaKnown RBP11.17□□□□□ -0.62
VPS39-201ENST00000318006 TMED9Q9BVK6 235 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms