RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 VMP1Q96GC9 406 aa12.56□□□□□ -0.4
SNX1-201ENST00000261889 TCF25Q9BQ70 676 aa12.56□□□□□ -0.4
SNX1-201ENST00000261889 RMND5AQ9H871 391 aa12.56□□□□□ -0.4
SNX1-201ENST00000261889 FBXL12Q9NXK8 326 aa12.56□□□□□ -0.4
SNX1-201ENST00000261889 DNAJC27Q9NZQ0 273 aa12.56□□□□□ -0.4
SNX1-201ENST00000261889 TMED5Q9Y3A6 229 aa12.56□□□□□ -0.4
SNX1-201ENST00000261889 METTL15A6NJ78 407 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 PCDH17O14917 1159 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 TBL1XO60907 577 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 DUSP11O75319 330 aaKnown RBP12.55□□□□□ -0.4
SNX1-201ENST00000261889 IL6P05231 212 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 ATF6P18850 670 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 PTPN6P29350 595 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 CSNK1DP48730 415 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 GABARAPL2P60520 117 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 HOXC5Q00444 222 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 ABRQ12979 859 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 ATAD3CQ5T2N8 411 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 LHX8Q68G74 356 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 GLB1LQ6UWU2 654 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 EFL1Q7Z2Z2 1120 aaKnown RBP12.55□□□□□ -0.4
SNX1-201ENST00000261889 CYP2U1Q7Z449 544 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 PTOV1Q86YD1 416 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 LAX1Q8IWV1 398 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 GPR151Q8TDV0 419 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 TSPEARQ8WU66 669 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 CTRCQ99895 268 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 IL1RAPQ9NPH3 570 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 IL17CQ9P0M4 197 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 PCDHGB6Q9Y5F9 930 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 ANKRD36A6QL64 1941 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 IGLV3-10A0A075B6K4 115 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 TMEM202A6NGA9 273 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 SLC16A6O15403 523 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 SEPT4O43236 478 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 ACSL4O60488 711 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 NME6O75414 186 aaPredicted RBP12.55□□□□□ -0.4
SNX1-201ENST00000261889 CLEC2LP0C7M8 214 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 ADORA3P0DMS8 318 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 GJA1P17302 382 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 PLD1Q13393 1074 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 FXNQ16595 210 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 TMIGD1Q6UXZ0 262 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 OTOP2Q7RTS6 562 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 SZRD1Q7Z422 152 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 SVOPQ8N4V2 548 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 ZBTB2Q8N680 514 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 ZFP41Q8N8Y5 198 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 SLAIN1Q8ND83 568 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 SCAMP4Q969E2 229 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 SLC38A4Q969I6 547 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 TRMT61AQ96FX7 289 aaKnown RBP12.55□□□□□ -0.4
SNX1-201ENST00000261889 PKP4Q99569 1192 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 SMG9Q9H0W8 520 aaKnown RBP12.55□□□□□ -0.4
SNX1-201ENST00000261889 FBXO44Q9H4M3 255 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 NECTIN3Q9NQS3 549 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 IMPAD1Q9NX62 359 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 NUFIP1Q9UHK0 495 aaKnown RBP12.55□□□□□ -0.4
SNX1-201ENST00000261889 FZD4Q9ULV1 537 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 DUSP12Q9UNI6 340 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 RALGAPA2Q2PPJ7 1873 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 CNTRLQ7Z7A1 2325 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 DOCK6Q96HP0 2047 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 COCHO43405 550 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 CLDN9O95484 217 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 ASGR1P07306 291 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 HOXD10P28358 340 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 HOXD11P31277 338 aaPredicted RBP12.55□□□□□ -0.4
SNX1-201ENST00000261889 RYKP34925 604 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 NFE2L1Q14494 772 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 BAK1Q16611 211 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 UGT8Q16880 541 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 VMACQ2NL98 169 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 UBE2R2Q712K3 238 aaPredicted RBP12.55□□□□□ -0.4
SNX1-201ENST00000261889 SETD9Q8NE22 299 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 WDR36Q8NI36 951 aaKnown RBP12.55□□□□□ -0.4
SNX1-201ENST00000261889 PPP1R2P1Q96PQ5 205 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 TRPV5Q9NQA5 729 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 FBXO8Q9NRD0 319 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 TMEM39AQ9NV64 488 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 C5AR2Q9P296 337 aa12.55□□□□□ -0.4
SNX1-201ENST00000261889 TRAV19A0A0A6YYK7 116 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 GNG14A0A1W2PPG7 69 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 WASH4PA8MWX3 477 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 GAPDHSO14556 408 aaPredicted RBP12.54□□□□□ -0.4
SNX1-201ENST00000261889 NUAK1O60285 661 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 SNX4O95219 450 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 VNN2O95498 520 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 STATHP02808 62 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 ESR1P03372 595 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 BPIP17213 487 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 PTGER3P43115 390 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 PPP3CCP48454 512 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 GZMMP51124 257 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 CHIT1Q13231 466 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 EXOC3L2Q2M3D2 409 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 SHFQ7M4L6 423 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 STK40Q8N2I9 435 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 CADM2Q8N3J6 435 aa12.54□□□□□ -0.4
SNX1-201ENST00000261889 AUTS2Q8WXX7 1259 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms