RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 STX19Q8N4C7 294 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 ATAD1Q8NBU5 361 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SMRP1Q8NCR6 262 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PIK3R3Q92569 461 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 CRELD1Q96HD1 420 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 FOPNLQ96NB1 174 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PAAF1Q9BRP4 392 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 NTMT1Q9BV86 223 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 ITPAQ9BY32 194 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 CIPCQ9C0C6 399 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SP140LQ9H930 580 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 SMURF2Q9HAU4 748 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 ZFYVE1Q9HBF4 777 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 BPIFA1Q9NP55 256 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 TMEM9BQ9NQ34 198 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 DNAJC11Q9NVH1 559 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 IL37Q9NZH6 218 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PDP1Q9P0J1 537 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 GMPR2Q9P2T1 348 aaKnown RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 IKZF3Q9UKT9 509 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 DOLKQ9UPQ8 538 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 PCDHGB1Q9Y5G3 927 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 MRPL42Q9Y6G3 142 aaKnown RBP3.87□□□□□ -1.79
SCN1A-214ENST00000637038 A3GALT2U3KPV4 340 aa3.87□□□□□ -1.79
SCN1A-214ENST00000637038 FAM92AA1XBS5 289 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 PDZK1P1A8MUH7 402 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 SUV39H1O43463 412 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 C9P02748 559 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 SRPRAP08240 638 aaKnown RBP3.86□□□□□ -1.79
SCN1A-214ENST00000637038 ARSAP15289 507 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 CTPS1P17812 591 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 PSMA3P25788 255 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 NSG1P42857 185 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 AP1S2P56377 157 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 PPP2R2BQ00005 443 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 RUNX1T1Q06455 604 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 ACSM2AQ08AH3 577 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 LAPTM5Q13571 262 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 PTPRCAPQ14761 206 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 C5orf22Q49AR2 442 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 ACSM2BQ68CK6 577 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 Q6ZSR9 355 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 DET1Q7L5Y6 550 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 DEFB128Q7Z7B8 93 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 ITIH5Q86UX2 942 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 BPHLQ86WA6 291 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-214ENST00000637038 DENND1CQ8IV53 801 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 SLC30A8Q8IWU4 369 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF454Q8N9F8 522 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 OR52B6Q8NGF0 335 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 CDC26Q8NHZ8 85 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 GTF2H4Q92759 462 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 PROX1Q92786 737 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 METTL2AQ96IZ6 378 aaKnown RBP3.86□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF583Q96ND8 569 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 PANX1Q96RD7 426 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 COPS8Q99627 209 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 SOX17Q9H6I2 414 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-214ENST00000637038 PDFQ9HBH1 243 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 AASDHPPTQ9NRN7 309 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 AFF4Q9UHB7 1163 aaKnown RBP3.86□□□□□ -1.79
SCN1A-214ENST00000637038 VPS4AQ9UN37 437 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 RUVBL1Q9Y265 456 aaKnown RBP3.86□□□□□ -1.79
SCN1A-214ENST00000637038 MAN2B2Q9Y2E5 1009 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 PCDHGB3Q9Y5G1 929 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 PCDHGA8Q9Y5G5 932 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 CPQQ9Y646 472 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 LTBP2Q14767 1821 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 ASPDHA6ND91 283 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 TMEM247A6NEH6 219 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 EFCAB9A8MZ26 197 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 FPGTO14772 594 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 SLC16A5O15375 505 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 NDUFB5O43674 189 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 SOCS5O75159 536 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 FADS2O95864 444 aaKnown RBP3.86□□□□□ -1.79
SCN1A-214ENST00000637038 POU2F2P09086 479 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 TFPTP0C1Z6 253 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 GP1BBP13224 206 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 ANXA8P13928 327 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 HOXD9P28356 352 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-214ENST00000637038 CORO1AP31146 461 aaKnown RBP3.86□□□□□ -1.79
SCN1A-214ENST00000637038 HMGCLP35914 325 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 OPRL1P41146 370 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 RECQLP46063 649 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-214ENST00000637038 CCL23P55773 120 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 CDC42P60953 191 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 COPZ1P61923 177 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 ZNF45Q02386 682 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 MGAT3Q09327 533 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 FADDQ13158 208 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 CDK5R2Q13319 367 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 CAMK2BQ13554 666 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 DGCR6Q14129 220 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 ABRAXAS2Q15018 415 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 DUSP6Q16828 381 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 CTSL3PQ5NE16 218 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 ADGRF1Q5T601 910 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 ATAD3BQ5T9A4 648 aa3.86□□□□□ -1.79
SCN1A-214ENST00000637038 PSAPL1Q6NUJ1 521 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms