RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 IER2Q9BTL4 223 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 MIR1-1HGQ9H1L0 117 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 CLMPQ9H6B4 373 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 IL1RL2Q9HB29 575 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 SPHK1Q9NYA1 384 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 DLGAP2Q9P1A6 1054 aa16.21■□□□□ 0.19
CLN3-252ENST00000636907 LEF1Q9UJU2 399 aaPredicted RBP16.21■□□□□ 0.19
CLN3-252ENST00000636907 RUVBL1Q9Y265 456 aaKnown RBP16.21■□□□□ 0.19
CLN3-252ENST00000636907 IGKV1-8A0A0C4DH67 115 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 DYTNA2CJ06 578 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 FXYD1O00168 92 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 TGFB1P01137 390 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 CXCR2P25025 360 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 SHMT2P34897 504 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 RACK1P63244 317 aaKnown RBP16.21■□□□□ 0.18
CLN3-252ENST00000636907 CSNK1G2P78368 415 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 RAE1P78406 368 aaKnown RBP16.21■□□□□ 0.18
CLN3-252ENST00000636907 ACSM2AQ08AH3 577 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 C1orf61Q13536 156 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 CEACAM7Q14002 265 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 ZNF423Q2M1K9 1284 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 TRMT5Q32P41 509 aaKnown RBP16.21■□□□□ 0.18
CLN3-252ENST00000636907 C6orf163Q5TEZ5 329 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 ACSM2BQ68CK6 577 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 SLC36A4Q6YBV0 504 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 AMIGO1Q86WK6 493 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 FAM20CQ8IXL6 584 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.21■□□□□ 0.18
CLN3-252ENST00000636907 C1orf52Q8N6N3 182 aaKnown RBP16.21■□□□□ 0.18
CLN3-252ENST00000636907 GLB1L3Q8NCI6 653 aaPredicted RBP16.21■□□□□ 0.18
CLN3-252ENST00000636907 OR4E2Q8NGC2 313 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 CHTF18Q8WVB6 975 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 GPATCH1Q9BRR8 931 aaKnown RBP16.21■□□□□ 0.18
CLN3-252ENST00000636907 TM9SF3Q9HD45 589 aa16.21■□□□□ 0.18
CLN3-252ENST00000636907 APOBEC3BQ9UH17 382 aaKnown RBP16.21■□□□□ 0.18
CLN3-252ENST00000636907 EML5Q05BV3 1969 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 FEZF1A0PJY2 475 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 JUNDP17535 347 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 PHEXP78562 749 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 NFYCQ13952 458 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 FAM174BQ3ZCQ3 159 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 SPIN4Q56A73 249 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 PRRT3Q5FWE3 981 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 SLC2A7Q6PXP3 512 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 IQCHQ86VS3 1027 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 SFTPA2Q8IWL1 248 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 TMEFF1Q8IYR6 380 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 FAM9CQ8IZT9 166 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 RNF148Q8N7C7 305 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 ANKRD53Q8N9V6 530 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 GPR156Q8NFN8 814 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 EGLN2Q96KS0 407 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 LRRC61Q9BV99 259 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 RHBGQ9H310 441 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 OR51B5Q9H339 312 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 MRPS30Q9NP92 439 aaKnown RBP16.2■□□□□ 0.18
CLN3-252ENST00000636907 GID8Q9NWU2 228 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 NMRK1Q9NWW6 199 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 ADA2Q9NZK5 511 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 OR6C2Q9NZP2 312 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 POMPQ9Y244 141 aa16.2■□□□□ 0.18
CLN3-252ENST00000636907 TLR4O00206 839 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 MYO1DO94832 1006 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 LRATO95237 230 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 CHRM5P08912 532 aaPredicted RBP16.19■□□□□ 0.18
CLN3-252ENST00000636907 XRCC1P18887 633 aaPredicted RBP16.19■□□□□ 0.18
CLN3-252ENST00000636907 ACTR3P61158 418 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 CAPRIN1Q14444 709 aaKnown RBP16.19■□□□□ 0.18
CLN3-252ENST00000636907 SNCBQ16143 134 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 SPANXN4Q5MJ08 99 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 TSSK4Q6SA08 328 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 ADCK2Q7Z695 626 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 PACS2Q86VP3 889 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 SYT12Q8IV01 421 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 TRIM48Q8IWZ4 208 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 ADGRF3Q8IZF5 1079 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 MINDY1Q8N5J2 469 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 OR2L3Q8NG85 312 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 C1orf216Q8TAB5 229 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 LRRC58Q96CX6 371 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 TMEM74Q96NL1 305 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 HOPXQ9BPY8 73 aaPredicted RBP16.19■□□□□ 0.18
CLN3-252ENST00000636907 SRMSQ9H3Y6 488 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 NT5DC2Q9H857 520 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 SLC6A20Q9NP91 592 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 SPAG4Q9NPE6 437 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 SLAMF8Q9P0V8 285 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 TMEM181Q9P2C4 612 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 PPT2Q9UMR5 302 aa16.19■□□□□ 0.18
CLN3-252ENST00000636907 ISM1B1AKI9 464 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 SAP18O00422 153 aaKnown RBP16.18■□□□□ 0.18
CLN3-252ENST00000636907 BTN3A3O00478 584 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 TBX6O95947 436 aaPredicted RBP16.18■□□□□ 0.18
CLN3-252ENST00000636907 VIPP01282 170 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 PCSK2P16519 638 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 SLC7A2P52569 658 aa16.18■□□□□ 0.18
CLN3-252ENST00000636907 CLNS1AP54105 237 aaKnown RBP16.18■□□□□ 0.18
CLN3-252ENST00000636907 UBE2IP63279 158 aaKnown RBP16.18■□□□□ 0.18
CLN3-252ENST00000636907 ABATP80404 500 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms