RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 BLOC1S3Q6QNY0 202 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 TMEM92Q6UXU6 159 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 ZNF765Q7L2R6 523 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 PARGQ86W56 976 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 CGREF1Q99674 301 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 C17orf62Q9BQA9 187 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 SORBS1Q9BX66 1292 aaKnown RBP15.17■□□□□ 0.02
CPSF1-213ENST00000620219 C6orf106Q9H6K1 298 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-213ENST00000620219 SDR39U1Q9NRG7 319 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-213ENST00000620219 ANAPC2Q9UJX6 822 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 MAP4K5Q9Y4K4 846 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 CKMT2P17540 419 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 TACR1P25103 407 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 KCNC3Q14003 757 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.17■□□□□ 0.02
CPSF1-213ENST00000620219 TRIML2Q8N7C3 387 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 PKP2Q99959 881 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 DPH7Q9BTV6 452 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 PRAMEF33A0A0G2JMD5 474 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 SLC5A10A0PJK1 596 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 PRSS38A1L453 326 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 IL6P05231 212 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 POU2F2P09086 479 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 PPP1R8Q12972 351 aaKnown RBP15.17■□□□□ 0.02
CPSF1-213ENST00000620219 MLF2Q15773 248 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-213ENST00000620219 GTDC1Q4AE62 458 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 TRIM73Q86UV7 250 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 TNIP2Q8NFZ5 429 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 CUEDC1Q9NWM3 386 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-213ENST00000620219 ADGRE2Q9UHX3 823 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 U3KQV3 271 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 PIPSLA2A3N6 862 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 GRXCR2A6NFK2 248 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 ACADSP16219 412 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 LTBRP36941 435 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 ACADVLP49748 655 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 GSK3BP49841 420 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 TAP2Q03519 686 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 TGM3Q08188 693 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 AMZ1Q400G9 498 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 AAGABQ6PD74 315 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 CCL4L1Q8NHW4 92 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 RERGQ96A58 199 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-213ENST00000620219 NTMT1Q9BV86 223 aa15.17■□□□□ 0.02
CPSF1-213ENST00000620219 JUNDP17535 347 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 LAPTM5Q13571 262 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 HOMEZQ8IX15 550 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 KBTBD2Q8IY47 623 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 CMTM7Q96FZ5 175 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 CAMK1GQ96NX5 476 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 QRFPRQ96P65 431 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 YIPF3Q9GZM5 350 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 KIF17Q9P2E2 1029 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 KLHL42Q9P2K6 505 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 NME4O00746 187 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 MBTPS2O43462 519 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 PFN3P60673 137 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 SMAD4Q13485 552 aaKnown RBP15.16■□□□□ 0.02
CPSF1-213ENST00000620219 FAM98BQ52LJ0 330 aaKnown RBP15.16■□□□□ 0.02
CPSF1-213ENST00000620219 SFT2D3Q587I9 215 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 NXPE4Q6UWF7 544 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 KIAA0907Q7Z7F0 614 aaPredicted RBP15.16■□□□□ 0.02
CPSF1-213ENST00000620219 STK32CQ86UX6 486 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 SLC15A3Q8IY34 581 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 ALPPL2P10696 532 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 IGFALSP35858 605 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 NANOGP8Q6NSW7 305 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 ZFP1Q6P2D0 407 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 HMGCLL1Q8TB92 370 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 SPACA7Q96KW9 195 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 SLC38A3Q99624 504 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 S1PR5Q9H228 398 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 TTYH1Q9H313 450 aaPredicted RBP15.16■□□□□ 0.02
CPSF1-213ENST00000620219 NANOGQ9H9S0 305 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 EQTNQ9NQ60 294 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 C5AR2Q9P296 337 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 SCML1Q9UN30 329 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 ZFR2Q9UPR6 939 aaKnown RBP15.16■□□□□ 0.02
CPSF1-213ENST00000620219 GPR45Q9Y5Y3 372 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 TTC28Q96AY4 2481 aa15.16■□□□□ 0.02
CPSF1-213ENST00000620219 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 LSM1O15116 133 aaKnown RBP15.15■□□□□ 0.02
CPSF1-213ENST00000620219 WISP3O95389 354 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-213ENST00000620219 PRPS1L1P21108 318 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 ASMTP46597 345 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 ZFAND4Q86XD8 727 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 TMEFF1Q8IYR6 380 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 ING2Q9H160 280 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 YY1AP1Q9H869 796 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 FAF1Q9UNN5 650 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-213ENST00000620219 DCNP07585 359 aaKnown RBP15.15■□□□□ 0.02
CPSF1-213ENST00000620219 KIR2DL1P43626 348 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-213ENST00000620219 YBX1P67809 324 aaKnown RBP15.15■□□□□ 0.02
CPSF1-213ENST00000620219 LRP8Q14114 963 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 PDCD4Q53EL6 469 aaKnown RBP15.15■□□□□ 0.02
CPSF1-213ENST00000620219 WLSQ5T9L3 541 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 PGM2L1Q6PCE3 622 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 ADAMTSL4Q6UY14 1074 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 GLB1L3Q8NCI6 653 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-213ENST00000620219 PCBD2Q9H0N5 130 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 130.7 ms