RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 NXPE4Q6UWF7 544 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 LRRC70Q7Z2Q7 622 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 TMPRSS11BQ86T26 416 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 IL22RA1Q8N6P7 574 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 TMEM109Q9BVC6 243 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 SLC7A5P2Q9GIP4 190 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 AKIRIN1Q9H9L7 192 aaPredicted RBP15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 PELI2Q9HAT8 420 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 LHX9Q9NQ69 397 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 GPRC5BQ9NZH0 403 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 CPSF2Q9P2I0 782 aaKnown RBP15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 LGALS13Q9UHV8 139 aa15.82■□□□□ 0.12
CCDC28A-202ENST00000611852 GSTA1P08263 222 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 HBQ1P09105 142 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 CCNYL3P0C7X3 344 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 GRK3P35626 688 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 STAT5AP42229 794 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 MEF2AQ02078 507 aaPredicted RBP15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 ABHD18Q0P651 414 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 COL9A2Q14055 689 aaPredicted RBP15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 GRM7Q14831 915 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 PDK4Q16654 411 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 RHBDD2Q6NTF9 364 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 ZNF517Q6ZMY9 492 aaPredicted RBP15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 SLCO4C1Q6ZQN7 724 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 RERGQ96A58 199 aaPredicted RBP15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 NDC1Q9BTX1 674 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 SARGQ9BW04 601 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 CAPS2Q9BXY5 557 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 WDR70Q9NW82 654 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 DCDC2Q9UHG0 476 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 PADI1Q9ULC6 663 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 SRPK3Q9UPE1 567 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 LAMA5O15230 3695 aa15.81■□□□□ 0.12
CCDC28A-202ENST00000611852 LOC101059948A0A1B0GTJ6 334 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 MEN1O00255 615 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 ZZEF1O43149 2961 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 LCMT2O60294 686 aaKnown RBP15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 EPORP19235 508 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 VARSP26640 1264 aaKnown RBP15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 BCL6P41182 706 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 SRSF6Q13247 344 aaKnown RBP15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 PCBP2Q15366 365 aaKnown RBP eCLIP15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 PRTGQ2VWP7 1150 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 C16orf46Q6P387 395 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 VN1R4Q7Z5H5 301 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 VASH2Q86V25 355 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 DSELQ8IZU8 1212 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 IQCKQ8N0W5 287 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 CSNK1A1LQ8N752 337 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 SNX31Q8N9S9 440 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 TTC29Q8NA56 475 aaPredicted RBP15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 ZNF740Q8NDX6 193 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 THAP11Q96EK4 314 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 SPNS1Q9H2V7 528 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 OPTCQ9UBM4 332 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 DHCR7Q9UBM7 475 aaKnown RBP15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 PCDHGA4Q9Y5G9 962 aa15.8■□□□□ 0.12
CCDC28A-202ENST00000611852 TRBC2A0A5B9 178 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 HYKKA2RU49 373 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 LRRC14BA6NHZ5 514 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 K7EPI3 171 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 PRAMEF4O60810 478 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 KLK3P07288 261 aaPredicted RBP15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 C1GALT1C1LP0DN25 315 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 H2AFXP16104 143 aaPredicted RBP15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 KRT4P19013 534 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 ARSFP54793 590 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 REEP5Q00765 189 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 ZNF844Q08AG5 666 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 HKDC1Q2TB90 917 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 FAM214AQ32MH5 1076 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 MANEAQ5SRI9 462 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 BEND6Q5SZJ8 279 aaPredicted RBP15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 YOD1Q5VVQ6 348 aaPredicted RBP15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 PRAMEF9Q5VWM5 478 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 ZNF385CQ66K41 422 aaPredicted RBP15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 ATG9BQ674R7 924 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 FAM199XQ6PEV8 388 aaPredicted RBP15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 PTGR2Q8N8N7 351 aaPredicted RBP15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 MFSD9Q8NBP5 474 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 PHF21BQ96EK2 531 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 GBP5Q96PP8 586 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 CCNL2Q96S94 520 aaPredicted RBP15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 EHD1Q9H4M9 534 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 CUTCQ9NTM9 273 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 TMCO1Q9UM00 188 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 TNPO3Q9Y5L0 923 aaKnown RBP15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 FER1L5A0AVI2 2057 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 PKD1L2Q7Z442 2459 aa15.79■□□□□ 0.12
CCDC28A-202ENST00000611852 STX16-NPEPL1H3BU86 382 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 STX16O14662 325 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 TERTO14746 1132 aaKnown RBP15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 CLGNO14967 610 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 P2RX6O15547 441 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 OR1F1O43749 312 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 SMIM24O75264 130 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 GLRA3O75311 464 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 SIX3O95343 332 aaPredicted RBP15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 CCT5P48643 541 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms