RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 BEST1O76090 585 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 PGM3O95394 542 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 CLDN14O95500 239 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 CRYABP02511 175 aaKnown RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 CLEC3BP05452 202 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 PIM1P11309 404 aaPredicted RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 GCFC2P16383 781 aaKnown RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 PGM1P36871 562 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 HTR6P50406 440 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 ALDH18A1P54886 795 aaKnown RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 KCNK10P57789 538 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 OR1D5P58170 312 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 TAS2R38P59533 333 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 AKAP17AQ02040 695 aaKnown RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 NSUN2Q08J23 767 aaKnown RBP eCLIP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 GALNT2Q10471 571 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 LRMPQ12912 555 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 STK4Q13043 487 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 ELAVL3Q14576 367 aaKnown RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 ELOCQ15369 112 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 SEC23BQ15437 767 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 NPY5RQ15761 445 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 KYAT1Q16773 422 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 SOWAHAQ2M3V2 549 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 EDRF1Q3B7T1 1238 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 C10orf120Q5SQS8 335 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 CERCAMQ5T4B2 595 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 SEL1L3Q68CR1 1132 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 RGS7BPQ6MZT1 257 aaPredicted RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 CPLX2Q6PUV4 134 aaKnown RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 CEACAM20Q6UY09 585 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 RRAGAQ7L523 313 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 PXKQ7Z7A4 578 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 SFTPA2Q8IWL1 248 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 BLIDQ8IZY5 108 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 OR8H3Q8N146 312 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 SYT2Q8N9I0 419 aaPredicted RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 OR56A3Q8NH54 315 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 WFDC5Q8TCV5 224 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 MGARPQ8TDB4 240 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 GRHL3Q8TE85 626 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 FAM120BQ96EK7 910 aaKnown RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 APOPT1Q96IL0 206 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 FYTTD1Q96QD9 318 aaKnown RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 KCNK16Q96T55 309 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 ELOVL4Q9GZR5 314 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 HIPK2Q9H2X6 1198 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 RABEP2Q9H5N1 569 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 CXorf56Q9H5V9 222 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 APMAPQ9HDC9 416 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 G6PC2Q9NQR9 355 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 TLR8Q9NR97 1041 aaKnown RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 OSER1Q9NX31 292 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 GPR83Q9NYM4 423 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 SH3BGRL2Q9UJC5 107 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 MID2Q9UJV3 735 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 AGO1Q9UL18 857 aaKnown RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 CAPN11Q9UMQ6 739 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 C2CD2Q9Y426 696 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 PSAT1Q9Y617 370 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 MGAM2Q2M2H8 2515 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 VPS13CQ709C8 3753 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 ANK3Q12955 4377 aaKnown RBP4.22□□□□□ -1.73
LINC00540-201ENST00000611481 A0A087WWL8 130 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 TCRBV5S1A1TA0A578 114 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 VWA3AA6NCI4 1184 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 TLCD2A6NGC4 264 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 AGAP14A8MT82 685 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 EFCAB8A8MWE9 144 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 PTGES3LE9PB15 166 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 H3BNX3 289 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 M0QYT0 321 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 CPLX1O14810 134 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 OGTO15294 1046 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 COQ9O75208 318 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 REC8O95072 547 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 TGDSO95455 350 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 PAK4O96013 591 aaPredicted RBP4.22□□□□□ -1.73
LINC00540-201ENST00000611481 IFNA2P01563 188 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 QDPRP09417 244 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 ALPIP09923 528 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 PLA2G4BP0C869 781 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 ALDH4A1P30038 563 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 SPAM1P38567 509 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 CSKP41240 450 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 PAFAH1B1P43034 410 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 ACOT2P49753 483 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 LIG4P49917 911 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 LIMK2P53671 638 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 ADORA2A-AS1P86434 159 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 B4GALNT1Q00973 533 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 TRA2AQ13595 282 aaKnown RBP eCLIP4.22□□□□□ -1.73
LINC00540-201ENST00000611481 DNASE1L3Q13609 305 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 E2F2Q14209 437 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 SLC29A2Q14542 456 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 IQCB1Q15051 598 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 TBCEQ15813 527 aaPredicted RBP4.22□□□□□ -1.73
LINC00540-201ENST00000611481 MPPE1Q53F39 396 aa4.22□□□□□ -1.73
LINC00540-201ENST00000611481 FAM46CQ5VWP2 391 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms