RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 IGF2-ASQ6U949 168 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 RGS9BPQ6ZS82 235 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 LRRC70Q7Z2Q7 622 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 THOC6Q86W42 341 aaKnown RBP14.39□□□□□ -0.11
TRIM28-207ENST00000597136 KMT5CQ86Y97 462 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 TEX9Q8N6V9 391 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 OR2L3Q8NG85 312 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 PPP4R1Q8TF05 950 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 SLC22A18Q96BI1 424 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 CNTNAP3BQ96NU0 1288 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 OR4K3Q96R72 315 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 TAAR9Q96RI9 348 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 CAPS2Q9BXY5 557 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 CNTNAP3Q9BZ76 1288 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 DRC3Q9H069 523 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 ZBTB26Q9HCK0 441 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 CCDC177Q9NQR7 707 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-207ENST00000597136 DNAJC11Q9NVH1 559 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 TAC3Q9UHF0 121 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 ADAM21Q9UKJ8 722 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 SH2B3Q9UQQ2 575 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 SLC22A14Q9Y267 594 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 BTRCQ9Y297 605 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 IGKV1-8A0A0C4DH67 115 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 TMEM114B3SHH9 223 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 ITM2AO43736 263 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 SNNO75324 88 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-207ENST00000597136 TIAF1O95411 115 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 EPB42P16452 691 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 CCND1P24385 295 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 SERPINB5P36952 375 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 GABRA4P48169 554 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 SLC1A6P48664 564 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 ABCE1P61221 599 aaKnown RBP14.39□□□□□ -0.11
TRIM28-207ENST00000597136 CLCQ05315 142 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 GTF2H2Q13888 395 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 GTF2H2CQ6P1K8 395 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 ATG14Q6ZNE5 492 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 GOLGA7Q7Z5G4 137 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 ZFAND4Q86XD8 727 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 LSMEM2Q8N112 164 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 CARFQ8N187 725 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 C19orf47Q8N9M1 422 aaKnown RBP14.39□□□□□ -0.11
TRIM28-207ENST00000597136 TRMOQ9BU70 441 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 C20orf27Q9GZN8 174 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 ZNF395Q9H8N7 513 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-207ENST00000597136 SLC6A20Q9NP91 592 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 SEMA4BQ9NPR2 832 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-207ENST00000597136 FGF21Q9NSA1 209 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 PCDHB11Q9Y5F2 797 aa14.39□□□□□ -0.11
TRIM28-207ENST00000597136 TCP11X1B4DZS4 312 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 PPP6CO00743 305 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 POLR1CO15160 346 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-207ENST00000597136 NVLO15381 856 aaKnown RBP14.38□□□□□ -0.11
TRIM28-207ENST00000597136 LYPLA1O75608 230 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-207ENST00000597136 NPPBP16860 134 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 TSPAN8P19075 237 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 EPORP19235 508 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 PIK3CGP48736 1102 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 LCP2Q13094 533 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 DEFB110Q30KQ9 67 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 TBC1D25Q3MII6 688 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 ARL13AQ5H913 290 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-207ENST00000597136 PRAMEF17Q5VTA0 474 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 DNAJC22Q8N4W6 341 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 SNX31Q8N9S9 440 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 TRPC4APQ8TEL6 797 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 ZNF501Q96CX3 271 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-207ENST00000597136 DPH7Q9BTV6 452 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 IPPKQ9H8X2 491 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 PDE7BQ9NP56 450 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 THAP1Q9NVV9 213 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 CUEDC1Q9NWM3 386 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-207ENST00000597136 DKK4Q9UBT3 224 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 ANGPTL3Q9Y5C1 460 aa14.38□□□□□ -0.11
TRIM28-207ENST00000597136 NBEAQ8NFP9 2946 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 LOC400499M0QZD8 3231 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 UBFD1O14562 309 aaKnown RBP14.37□□□□□ -0.11
TRIM28-207ENST00000597136 OR7A17O14581 309 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 CTSVO60911 334 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 MLYCDO95822 493 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 CHRNGP07510 517 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 ZNF28P17035 718 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 MLLT3P42568 568 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-207ENST00000597136 OCRLQ01968 901 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 PRDX1Q06830 199 aaKnown RBP14.37□□□□□ -0.11
TRIM28-207ENST00000597136 GALNT1Q10472 559 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-207ENST00000597136 CDC16Q13042 620 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 TUBB3Q13509 450 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 DCAF12Q5T6F0 453 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 THEMIS2Q5TEJ8 643 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 PRAMEF13Q5VWM6 474 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 ICE2Q659A1 982 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 OR1L3Q8NH93 324 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 TCTN2Q96GX1 697 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 ZNF578Q96N58 590 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-207ENST00000597136 FCRL4Q96PJ5 515 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 SORT1Q99523 831 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 PCBD2Q9H0N5 130 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 NOL11Q9H8H0 719 aaKnown RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms