RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 MRPS18BQ9Y676 258 aaKnown RBP11.37□□□□□ -0.59
LIG3-213ENST00000590630 KCNE2Q9Y6J6 123 aa11.37□□□□□ -0.59
LIG3-213ENST00000590630 ATRXP46100 2492 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 NCF1BA6NI72 391 aaPredicted RBP11.36□□□□□ -0.59
LIG3-213ENST00000590630 SYCE1LA8MT33 242 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 NCF1CA8MVU1 366 aaPredicted RBP11.36□□□□□ -0.59
LIG3-213ENST00000590630 ERVH48-1M5A8F1 160 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 CREG1O75629 220 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 KLHL2O95198 593 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 CAPN1P07384 714 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 SNRPAP09012 282 aaKnown RBP11.36□□□□□ -0.59
LIG3-213ENST00000590630 PIM1P11309 404 aaPredicted RBP11.36□□□□□ -0.59
LIG3-213ENST00000590630 NCF1P14598 390 aaPredicted RBP11.36□□□□□ -0.59
LIG3-213ENST00000590630 GNAZP19086 355 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 ALAS2P22557 587 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 MAGEA12P43365 314 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 IRF9Q00978 393 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 CDC20Q12834 499 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 ACAP2Q15057 778 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 MUM1Q2TAK8 710 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 NKAIN1Q4KMZ8 207 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 C1orf189Q5VU69 101 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 GARNL3Q5VVW2 1013 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 LCN10Q6JVE6 187 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 PRMT9Q6P2P2 845 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 ADGRD1Q6QNK2 874 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 SYVN1Q86TM6 617 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 TBC1D19Q8N5T2 526 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 ENDOVQ8N8Q3 282 aaKnown RBP11.36□□□□□ -0.59
LIG3-213ENST00000590630 OR4K1Q8NGD4 311 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 KCTD4Q8WVF5 259 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 SLC5A11Q8WWX8 675 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 NEIL2Q969S2 332 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 NXNL1Q96CM4 212 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 MTBPQ96DY7 904 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 UBL7Q96S82 380 aaPredicted RBP11.36□□□□□ -0.59
LIG3-213ENST00000590630 ATOH8Q96SQ7 321 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 CCDC77Q9BR77 488 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 SARGQ9BW04 601 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 EPB41L4BQ9H329 900 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 WWOXQ9NZC7 414 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 NUDT4Q9NZJ9 180 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 CD274Q9NZQ7 290 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 IFT80Q9P2H3 777 aaPredicted RBP11.36□□□□□ -0.59
LIG3-213ENST00000590630 NDOR1Q9UHB4 597 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 SLC22A14Q9Y267 594 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 DYRK1BQ9Y463 629 aa11.36□□□□□ -0.59
LIG3-213ENST00000590630 TLN1Q9Y490 2541 aaKnown RBP11.35□□□□□ -0.59
LIG3-213ENST00000590630 TRBC2A0A5B9 178 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 TRIM49D1C9J1S8 452 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 NKX2-8O15522 239 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 WDR47O94967 919 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 ONECUT2O95948 504 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 PRKAR1AP10644 381 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 COL6A2P12110 1019 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 GCAP28676 217 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 GMPRP36959 345 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 KCNC1P48547 511 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 CYP4F2P78329 520 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 PLD3Q8IV08 490 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 TTC9Q92623 222 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 FKBP10Q96AY3 582 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 MVB12AQ96EY5 273 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 WBP1Q96G27 269 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 CABS1Q96KC9 395 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 C10orf90Q96M02 699 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 TSNARE1Q96NA8 513 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 RUFY1Q96T51 708 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 TMEM79Q9BSE2 394 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 CAPS2Q9BXY5 557 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 VPS11Q9H270 941 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 SYNPO2LQ9H987 977 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 PPCSQ9HAB8 311 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 PELI2Q9HAT8 420 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 GPRC5BQ9NZH0 403 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 PSMC3IPQ9P2W1 217 aaPredicted RBP11.35□□□□□ -0.59
LIG3-213ENST00000590630 GPN3Q9UHW5 284 aaPredicted RBP11.35□□□□□ -0.59
LIG3-213ENST00000590630 PTBP2Q9UKA9 531 aaKnown RBP11.35□□□□□ -0.59
LIG3-213ENST00000590630 TCFL5Q9UL49 500 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 RUVBL1Q9Y265 456 aaKnown RBP11.35□□□□□ -0.59
LIG3-213ENST00000590630 SCN3AQ9NY46 2000 aa11.35□□□□□ -0.59
LIG3-213ENST00000590630 NUP210LQ5VU65 1888 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 FEZF1A0PJY2 475 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 SUPT3HB4E1H0 165 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 TAPBPO15533 448 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 SUPT3HO75486 399 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 STK16O75716 305 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 ALBP02768 609 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 SLC35G6P0C7Q6 338 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 ITGAXP20702 1163 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 BCL6P41182 706 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 GDF5P43026 501 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 GLRBP48167 497 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 RPS18P62269 152 aaKnown RBP11.34□□□□□ -0.59
LIG3-213ENST00000590630 VSNL1P62760 191 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 CDC16Q13042 620 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 FAM53BQ14153 422 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 ERV3-1Q14264 604 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 NDUFA9Q16795 377 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 UGT8Q16880 541 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms