RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 TMEM39AQ9NV64 488 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 MPP6Q9NZW5 540 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 HCSTQ9UBK5 93 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 PCDHGB1Q9Y5G3 927 aa9.3□□□□□ -0.92
CCDC40-212ENST00000574799 PRR23AA6NEV1 266 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 FADS2P1A8MWK0 482 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 THP07101 528 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 RGS6P49758 472 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 HTR6P50406 440 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 CSRP3P50461 194 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 SRP54P61011 504 aaKnown RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 CSNK2BP67870 215 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 GALNT3Q14435 633 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 TAF12Q16514 161 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 SNAPC1Q16533 368 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 FXNQ16595 210 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 TATDN3Q17R31 274 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 AAK1Q2M2I8 961 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 INTS6LQ5JSJ4 861 aaKnown RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 C10orf62Q5T681 223 aaPredicted RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 LAIR2Q6ISS4 152 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 ZZZ3Q8IYH5 903 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 SLC37A3Q8NCC5 494 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 TMEM203Q969S6 136 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 UBXN10Q96LJ8 280 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 PPP3R2Q96LZ3 170 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 ZNF599Q96NL3 588 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 C17orf62Q9BQA9 187 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 NDFIP2Q9NV92 336 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 ABI2Q9NYB9 513 aaPredicted RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 TAS2R16Q9NYV7 291 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 NLKQ9UBE8 527 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 UXTQ9UBK9 157 aaPredicted RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 SSR3Q9UNL2 185 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 MAPRE3Q9UPY8 281 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 PCDHGB2Q9Y5G2 931 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 GBF1Q92538 1859 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 M0R129 80 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 ANKRD28O15084 1053 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 MTRF1O75570 445 aaKnown RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 ITGAMP11215 1152 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 PRKAR2AP13861 404 aaKnown RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 DAPP51397 102 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 DSC1Q08554 894 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 GRIK2Q13002 908 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 GPR50Q13585 617 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 POU4F3Q15319 338 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 PDE12Q6L8Q7 609 aaKnown RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 SHQ1Q6PI26 577 aaKnown RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 DOK6Q6PKX4 331 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 TMEM207Q6UWW9 146 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 SLC46A3Q7Z3Q1 461 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 LIX1Q8N485 282 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 OR52B6Q8NGF0 335 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 MYLPFQ96A32 169 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 MUTYHQ9UIF7 546 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 RPS6KA6Q9UK32 745 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 FBXW11Q9UKB1 542 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 RFXANKO14593 260 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 DSCR3O14972 297 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 SLC7A4O43246 635 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 RGS14O43566 566 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 SH3BP5O60239 455 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 PCDHGA12O60330 932 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 THPOP40225 353 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 C19orf57Q0VDD7 668 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 C1DQ13901 141 aaKnown RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 KEAP1Q14145 624 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 ANGPT1Q15389 498 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 ZRANB3Q5FWF4 1079 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 CPZQ66K79 652 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 XKRXQ6PP77 449 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 VTCN1Q7Z7D3 282 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 LAX1Q8IWV1 398 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 GPR65Q8IYL9 337 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 ZNF557Q8N988 423 aaPredicted RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 ZFAND1Q8TCF1 268 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 ZNF431Q8TF32 576 aaPredicted RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 TFB2MQ9H5Q4 396 aaKnown RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 GORASP2Q9H8Y8 452 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 RAD18Q9NS91 495 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 ACOXLQ9NUZ1 547 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 MCUBQ9NWR8 336 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 RDH8Q9NYR8 311 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 COMMD3Q9UBI1 195 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 AFF4Q9UHB7 1163 aaKnown RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 ATPIF1Q9UII2 106 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 ABCG2Q9UNQ0 655 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 HSPE1-MOB4S4R3N1 261 aa9.29□□□□□ -0.92
CCDC40-212ENST00000574799 MN1Q10571 1320 aaPredicted RBP9.29□□□□□ -0.92
CCDC40-212ENST00000574799 ORC5O43913 435 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 KERAO60938 352 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 PTHP01270 115 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 CKBP12277 381 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 CCNCP24863 283 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 NUDT1P36639 197 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 RPS5P46782 204 aaKnown RBP9.28□□□□□ -0.92
CCDC40-212ENST00000574799 ALDH6A1Q02252 535 aaKnown RBP9.28□□□□□ -0.92
CCDC40-212ENST00000574799 DSC2Q02487 901 aa9.28□□□□□ -0.92
CCDC40-212ENST00000574799 DBPQ10586 325 aaPredicted RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms