RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 FAM120CQ9NX05 1096 aaKnown RBP19.56■□□□□ 0.72
CLN3-230ENST00000568076 GABRR3A8MPY1 467 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 C1QTNF3-AMACRE9PGA6 284 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 CLIC1O00299 241 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 VEGFDO43915 354 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 SEC24DO94855 1032 aaPredicted RBP19.55■□□□□ 0.72
CLN3-230ENST00000568076 ANXA4P09525 319 aaPredicted RBP19.55■□□□□ 0.72
CLN3-230ENST00000568076 ENGP17813 658 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 SLBPQ14493 270 aaKnown RBP eCLIP19.55■□□□□ 0.72
CLN3-230ENST00000568076 HKDC1Q2TB90 917 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 KCTD21Q4G0X4 260 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 SLC30A9Q6PML9 568 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 PATL1Q86TB9 770 aaKnown RBP19.55■□□□□ 0.72
CLN3-230ENST00000568076 SERPINA11Q86U17 422 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 STK32CQ86UX6 486 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 OR10Q1Q8NGQ4 319 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 SH3KBP1Q96B97 665 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 OR52A5Q9H2C5 316 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 SPNS1Q9H2V7 528 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 MGAT4DA6NG13 374 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 TRIM64A6NGJ6 449 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 MYO1DO94832 1006 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 KAT7O95251 611 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 DRD3P35462 400 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 ALDH3B2P48448 385 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 CCR3P51677 355 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 FCHO2Q0JRZ9 810 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 ZIK1Q3SY52 487 aaPredicted RBP19.55■□□□□ 0.72
CLN3-230ENST00000568076 CES5AQ6NT32 575 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 ZNF621Q6ZSS3 439 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 DSG4Q86SJ6 1040 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 CACUL1Q86Y37 369 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 HS3ST5Q8IZT8 346 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 TRIML2Q8N7C3 387 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 NMD3Q96D46 503 aaKnown RBP19.55■□□□□ 0.72
CLN3-230ENST00000568076 DUSP26Q9BV47 211 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 DYRK1BQ9Y463 629 aa19.55■□□□□ 0.72
CLN3-230ENST00000568076 CPSF4O95639 269 aaKnown RBP19.54■□□□□ 0.72
CLN3-230ENST00000568076 C1GALT1C1LP0DN25 315 aa19.54■□□□□ 0.72
CLN3-230ENST00000568076 IL1RNP18510 177 aa19.54■□□□□ 0.72
CLN3-230ENST00000568076 MEF2AQ02078 507 aaPredicted RBP19.54■□□□□ 0.72
CLN3-230ENST00000568076 SPIN4Q56A73 249 aa19.54■□□□□ 0.72
CLN3-230ENST00000568076 ZDHHC13Q8IUH4 622 aa19.54■□□□□ 0.72
CLN3-230ENST00000568076 LAS2Q8IYD9 372 aa19.54■□□□□ 0.72
CLN3-230ENST00000568076 CPA6Q8N4T0 437 aa19.54■□□□□ 0.72
CLN3-230ENST00000568076 TMIGD2Q96BF3 282 aa19.54■□□□□ 0.72
CLN3-230ENST00000568076 IL17FQ96PD4 163 aa19.54■□□□□ 0.72
CLN3-230ENST00000568076 LGR4Q9BXB1 951 aa19.54■□□□□ 0.72
CLN3-230ENST00000568076 IGFLR1Q9H665 355 aa19.54■□□□□ 0.72
CLN3-230ENST00000568076 MAGIXQ9H6Y5 334 aa19.54■□□□□ 0.72
CLN3-230ENST00000568076 ITM2CQ9NQX7 267 aa19.54■□□□□ 0.72
CLN3-230ENST00000568076 SLC23A2Q9UGH3 650 aa19.54■□□□□ 0.72
CLN3-230ENST00000568076 EXO1Q9UQ84 846 aaKnown RBP19.54■□□□□ 0.72
CLN3-230ENST00000568076 COMMD3-BMI1R4GMX3 469 aa19.54■□□□□ 0.72
CLN3-230ENST00000568076 EVPLLA8MZ36 301 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 G3V2T6 193 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 KCNK5O95279 499 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 GPX2P18283 190 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 IDSP22304 550 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 TIA1P31483 386 aaKnown RBP eCLIP19.53■□□□□ 0.72
CLN3-230ENST00000568076 PNLIPRP1P54315 467 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 TAS2R38P59533 333 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 TUBA4AP68366 448 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 ANKRD34AQ69YU3 496 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 PNCKQ6P2M8 343 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 ADAMTSL4Q6UY14 1074 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 TMEM179BQ7Z7N9 219 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 HEATR4Q86WZ0 1026 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 ZZZ3Q8IYH5 903 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 CLEC4FQ8N1N0 589 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 RAB7BQ96AH8 199 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 PYURFQ96I23 114 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 AASDHPPTQ9NRN7 309 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 DMTF1Q9Y222 760 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 PIPSLA2A3N6 862 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 IGLON5A6NGN9 336 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 TRIM64CA6NLI5 447 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 H0YAE9 185 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 EPN2O95208 641 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 PCCBP05166 539 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 ASMTP46597 345 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 PPP1R8Q12972 351 aaKnown RBP19.53■□□□□ 0.72
CLN3-230ENST00000568076 PLCL1Q15111 1095 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 ZCCHC8Q6NZY4 707 aaKnown RBP19.53■□□□□ 0.72
CLN3-230ENST00000568076 ABRAXAS1Q6UWZ7 409 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 CAMKMTQ7Z624 323 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 PTOV1Q86YD1 416 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 OR5AR1Q8NGP9 310 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 SLC5A11Q8WWX8 675 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 REPS1Q96D71 796 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 NRTNQ99748 197 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 DPH2Q9BQC3 489 aaPredicted RBP19.53■□□□□ 0.72
CLN3-230ENST00000568076 EFCAB11Q9BUY7 163 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 SMURF2Q9HAU4 748 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 PRM3Q9NNZ6 103 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 DMRT3Q9NQL9 472 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 PLAGL1Q9UM63 463 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 CEPT1Q9Y6K0 416 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 PCM1Q15154 2024 aa19.53■□□□□ 0.72
CLN3-230ENST00000568076 EPOPA6NHQ4 379 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms