RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 RBP1P09455 135 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 MSL3P1P0C860 447 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 COL6A2P12110 1019 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 PTCHD3Q3KNS1 767 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 CDKL4Q5MAI5 379 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 TIFABQ6ZNK6 161 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 THOC6Q86W42 341 aaKnown RBP16.52■□□□□ 0.24
CLN3-217ENST00000565354 MCATQ8IVS2 390 aaKnown RBP16.52■□□□□ 0.24
CLN3-217ENST00000565354 DNAJC22Q8N4W6 341 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 OR1L3Q8NH93 324 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 OR2W6PQ8NHA6 318 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 RHEBL1Q8TAI7 183 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 RHBDF1Q96CC6 855 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 SELENOSQ9BQE4 189 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 PLCD4Q9BRC7 762 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 SGPP1Q9BX95 441 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 CUEDC1Q9NWM3 386 aaPredicted RBP16.52■□□□□ 0.24
CLN3-217ENST00000565354 EURLQ9NYK6 297 aa16.52■□□□□ 0.24
CLN3-217ENST00000565354 ANKRD12Q6UB98 2062 aa16.52■□□□□ 0.23
CLN3-217ENST00000565354 BLACEA4D250 179 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 H7BY64 318 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 UBXN8O00124 270 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 RAD1O60671 282 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 IPO13O94829 963 aaKnown RBP16.51■□□□□ 0.23
CLN3-217ENST00000565354 NUDT17P0C025 328 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 GFAPP14136 432 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 GRK3P35626 688 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 YBX1P67809 324 aaKnown RBP16.51■□□□□ 0.23
CLN3-217ENST00000565354 PWWP2BQ6NUJ5 590 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 TDRPQ86YL5 185 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 PLD6Q8N2A8 252 aaKnown RBP16.51■□□□□ 0.23
CLN3-217ENST00000565354 MREGQ8N565 214 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 TTC29Q8NA56 475 aaPredicted RBP16.51■□□□□ 0.23
CLN3-217ENST00000565354 PDPRQ8NCN5 879 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 CLIP3Q96DZ5 547 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 SLC45A3Q96JT2 553 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 PRAP1Q96NZ9 151 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 ATOH8Q96SQ7 321 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 ZFYVE21Q9BQ24 234 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 TMEM184CQ9NVA4 438 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 CPSF2Q9P2I0 782 aaKnown RBP16.51■□□□□ 0.23
CLN3-217ENST00000565354 PLAAQ9Y263 795 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 SLC22A14Q9Y267 594 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 KLK4Q9Y5K2 254 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 KCNE2Q9Y6J6 123 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 PCM1Q15154 2024 aa16.51■□□□□ 0.23
CLN3-217ENST00000565354 OR2A25A4D2G3 310 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 GOLGA8RI6L899 631 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 CCNT2O60583 730 aaKnown RBP16.5■□□□□ 0.23
CLN3-217ENST00000565354 CPNE3O75131 537 aaKnown RBP16.5■□□□□ 0.23
CLN3-217ENST00000565354 RFPL1O75677 317 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 EIF2S1P05198 315 aaKnown RBP16.5■□□□□ 0.23
CLN3-217ENST00000565354 CCNYL3P0C7X3 344 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 CDH1P12830 882 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 EZRP15311 586 aaKnown RBP16.5■□□□□ 0.23
CLN3-217ENST00000565354 HSPA7P48741 367 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 C18orf21Q32NC0 220 aaPredicted RBP16.5■□□□□ 0.23
CLN3-217ENST00000565354 TECRLQ5HYJ1 363 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 TCTE1Q5JU00 501 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 TLDC1Q6P9B6 456 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 C6orf15Q6UXA7 325 aaPredicted RBP16.5■□□□□ 0.23
CLN3-217ENST00000565354 RNF44Q7L0R7 432 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 PAQR7Q86WK9 346 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 NLGN4XQ8N0W4 816 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 RIBC1Q8N443 379 aaPredicted RBP16.5■□□□□ 0.23
CLN3-217ENST00000565354 TBC1D19Q8N5T2 526 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 SNX31Q8N9S9 440 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 NLGN4YQ8NFZ3 816 aaPredicted RBP16.5■□□□□ 0.23
CLN3-217ENST00000565354 ACMSDQ8TDX5 336 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 SLC5A11Q8WWX8 675 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 RERGQ96A58 199 aaPredicted RBP16.5■□□□□ 0.23
CLN3-217ENST00000565354 ACTR5Q9H9F9 607 aaPredicted RBP16.5■□□□□ 0.23
CLN3-217ENST00000565354 DNAJC11Q9NVH1 559 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 ZNF358Q9NW07 568 aa16.5■□□□□ 0.23
CLN3-217ENST00000565354 TMEM184BQ9Y519 407 aaPredicted RBP16.5■□□□□ 0.23
CLN3-217ENST00000565354 TEP1Q99973 2627 aaKnown RBP16.49■□□□□ 0.23
CLN3-217ENST00000565354 IGKV1-8A0A0C4DH67 115 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 NKX2-8O15522 239 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 SRPX2O60687 465 aaPredicted RBP16.49■□□□□ 0.23
CLN3-217ENST00000565354 SMIM24O75264 130 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 STK16O75716 305 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 TIAF1O95411 115 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 HBQ1P09105 142 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 PYGBP11216 843 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 NPPBP16860 134 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 ZNF28P17035 718 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 GDF5P43026 501 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 CCR8P51685 355 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 VSX2P58304 361 aaPredicted RBP16.49■□□□□ 0.23
CLN3-217ENST00000565354 FBXO48Q5FWF7 155 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 ZNF425Q6IV72 752 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 TMPRSS11BQ86T26 416 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 ESX1Q8N693 406 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 ZNF655Q8N720 491 aaPredicted RBP16.49■□□□□ 0.23
CLN3-217ENST00000565354 GALNT6Q8NCL4 622 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 MIB2Q96AX9 1013 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 TMEM79Q9BSE2 394 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 CAPS2Q9BXY5 557 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 ROPN1BQ9BZX4 212 aaPredicted RBP16.49■□□□□ 0.23
CLN3-217ENST00000565354 SPRTNQ9H040 489 aaPredicted RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms