RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 OR51E2Q9H255 320 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 RAD18Q9NS91 495 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 TAS2R16Q9NYV7 291 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 METTL15A6NJ78 407 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 SEMG1P04279 462 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 OR1D2P34982 312 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 CTSKP43235 329 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 CRYBA2P53672 197 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 WNT3P56703 355 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 CYP27C1Q4G0S4 372 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 C6orf183Q5T699 404 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 UBE2UQ5VVX9 321 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 ANGPTL8Q6UXH0 198 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 CBLL1Q75N03 491 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 EIF3MQ7L2H7 374 aaKnown RBP12.78□□□□□ -0.36
CLN3-210ENST00000563874 AKAP14Q86UN6 197 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 SPPL2AQ8TCT8 520 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 CMTM7Q96FZ5 175 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 Q96MT0 163 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 SIGLEC11Q96RL6 698 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 FEVQ99581 238 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 HTATIP2Q9BUP3 242 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 RDH14Q9HBH5 336 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 RLIMQ9NVW2 624 aa12.78□□□□□ -0.36
CLN3-210ENST00000563874 KCNE1BA0A087WTH5 132 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 PABPN1LA6NDY0 278 aaKnown RBP12.77□□□□□ -0.36
CLN3-210ENST00000563874 DSCR3O14972 297 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 SEPT4O43236 478 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 MTX2O75431 263 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 C9P02748 559 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 ABCB1P08183 1280 aaPredicted RBP12.77□□□□□ -0.36
CLN3-210ENST00000563874 STSP08842 583 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 OR1E2P47887 323 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 ITGA1P56199 1179 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 FADDQ13158 208 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 PLD1Q13393 1074 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 TP53BP2Q13625 1128 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 TPRG1LQ5T0D9 272 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 MFSD14CQ5VZR4 134 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 FRG2Q64ET8 278 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 FAAH2Q6GMR7 532 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 DESI1Q6ICB0 168 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 FAHD1Q6P587 224 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 SPATC1Q76KD6 591 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 FBXO22Q8NEZ5 403 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 BCL7CQ8WUZ0 217 aaPredicted RBP12.77□□□□□ -0.36
CLN3-210ENST00000563874 IPCEF1Q8WWN9 437 aaPredicted RBP12.77□□□□□ -0.36
CLN3-210ENST00000563874 FRG2BQ96QU4 278 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 CHCHD6Q9BRQ6 235 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 TTLL2Q9BWV7 592 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 TPT1P8Q9HAU6 139 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 TMED5Q9Y3A6 229 aa12.77□□□□□ -0.36
CLN3-210ENST00000563874 PRRC2BQ5JSZ5 2229 aaKnown RBP12.77□□□□□ -0.36
CLN3-210ENST00000563874 NPIPB15A6NHN6 443 aaPredicted RBP12.77□□□□□ -0.37
CLN3-210ENST00000563874 TLL1O43897 1013 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 SCN2BO60939 215 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 RPLP2P05387 115 aaKnown RBP12.77□□□□□ -0.37
CLN3-210ENST00000563874 ACPPP15309 386 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 AOAHP28039 575 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 SPAM1P38567 509 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 CHIT1Q13231 466 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 BCL2A1Q16548 175 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 ATP13A5Q4VNC0 1218 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 INO80DQ53TQ3 878 aaPredicted RBP12.77□□□□□ -0.37
CLN3-210ENST00000563874 ADNP2Q6IQ32 1131 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 RNF165Q6ZSG1 346 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 FAM124AQ86V42 546 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 ELMOD1Q8N336 334 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 UTP15Q8TED0 518 aaKnown RBP12.77□□□□□ -0.37
CLN3-210ENST00000563874 PLD4Q96BZ4 506 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 TBC1D20Q96BZ9 403 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 SLC22A12Q96S37 553 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 CDK5RAP1Q96SZ6 601 aaKnown RBP12.77□□□□□ -0.37
CLN3-210ENST00000563874 MMP27Q9H306 513 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 EHD1Q9H4M9 534 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 CWH43Q9H720 699 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 TRBV5-4A0A0C4DH59 114 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 RFPL2O75678 378 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 POU2F1P14859 743 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 GPX2P18283 190 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 MAPK1P28482 360 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 SMAD3P84022 425 aaKnown RBP12.77□□□□□ -0.37
CLN3-210ENST00000563874 B4GALNT1Q00973 533 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 TAF12Q16514 161 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 IQCCQ4KMZ1 466 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 PARP16Q8N5Y8 322 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 CAPSLQ8WWF8 208 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 GGHQ92820 318 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 HRASLS5Q96KN8 279 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 C7orf34Q96L11 122 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 PITX2Q99697 317 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 P2RY13Q9BPV8 354 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 CDADC1Q9BWV3 514 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 CPNE5Q9HCH3 593 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 KCTD5Q9NXV2 234 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 FZD4Q9ULV1 537 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 SLC6A14Q9UN76 642 aa12.77□□□□□ -0.37
CLN3-210ENST00000563874 GFRA2O00451 464 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 HIST1H2AGP0C0S8 130 aaPredicted RBP12.76□□□□□ -0.37
CLN3-210ENST00000563874 HIST1H2ADP20671 130 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms