RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ACSBG2Q5FVE4 666 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 ABHD17BQ5VST6 288 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 MRNIPQ6NTE8 343 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 CENPUQ71F23 418 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 GDF7Q7Z4P5 450 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 SDCCAG8Q86SQ7 713 aaPredicted RBP15.55■□□□□ 0.08
CLN3-208ENST00000561505 KIAA1328Q86T90 577 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 ZNF295-AS1Q8N0V1 137 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 TXLNBQ8N3L3 684 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 ADAMTS18Q8TE60 1221 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 SKA2Q8WVK7 121 aaPredicted RBP15.55■□□□□ 0.08
CLN3-208ENST00000561505 LURAP1Q96LR2 239 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 CYTH2Q99418 400 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 VN1R1Q9GZP7 353 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.55■□□□□ 0.08
CLN3-208ENST00000561505 FAM114A2Q9NRY5 505 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 UTP6Q9NYH9 597 aaKnown RBP15.55■□□□□ 0.08
CLN3-208ENST00000561505 MKL2Q9ULH7 1088 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 SOX13Q9UN79 622 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 CELSR1Q9NYQ6 3014 aa15.55■□□□□ 0.08
CLN3-208ENST00000561505 A0A0A6YYC8 382 aaPredicted RBP15.54■□□□□ 0.08
CLN3-208ENST00000561505 TRGV8A0A0C4DH27 118 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 ASPDHA6ND91 283 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 ZNF839A8K0R7 811 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 I3L1I5 382 aaPredicted RBP15.54■□□□□ 0.08
CLN3-208ENST00000561505 FFAR3O14843 346 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 GPR42O15529 346 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 CCNDBP1O95273 360 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 VAPBO95292 243 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 NSA2O95478 260 aaKnown RBP15.54■□□□□ 0.08
CLN3-208ENST00000561505 SLC16A8O95907 504 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 C8orf89P0DMQ9 161 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 RPA3P35244 121 aaPredicted RBP15.54■□□□□ 0.08
CLN3-208ENST00000561505 CLCN7P51798 805 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 SYT16Q17RD7 645 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 ZXDCQ2QGD7 858 aaPredicted RBP15.54■□□□□ 0.08
CLN3-208ENST00000561505 KIAA0930Q6ICG6 404 aaPredicted RBP15.54■□□□□ 0.08
CLN3-208ENST00000561505 CYHR1Q6ZMK1 362 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 CCDC89Q8N998 374 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 MDS2Q8NDY4 140 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 ASB11Q8WXH4 323 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 TM4SF19Q96DZ7 209 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 BAG1Q99933 345 aaPredicted RBP15.54■□□□□ 0.08
CLN3-208ENST00000561505 TAC3Q9UHF0 121 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 TEKT2Q9UIF3 430 aa15.54■□□□□ 0.08
CLN3-208ENST00000561505 CATP04040 527 aaKnown RBP15.53■□□□□ 0.08
CLN3-208ENST00000561505 ANXA5P08758 320 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 TPSB2P20231 275 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 HRH2P25021 359 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 MAGEA6P43360 314 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 RBPJQ06330 500 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 KCNJ11Q14654 390 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 TPSAB1Q15661 275 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 KRTCAP3Q53RY4 240 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 ACER2Q5QJU3 275 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 SEL1L2Q5TEA6 688 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 FAAH2Q6GMR7 532 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 VN1R4Q7Z5H5 301 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 CPEB2Q7Z5Q1 589 aaKnown RBP15.53■□□□□ 0.08
CLN3-208ENST00000561505 CILP2Q8IUL8 1156 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 REXO1L1PQ8IX06 675 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 SUN3Q8TAQ9 357 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 SCMH1Q96GD3 660 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 NPAS2Q99743 824 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 EBNA1BP2Q99848 306 aaKnown RBP15.53■□□□□ 0.08
CLN3-208ENST00000561505 PCYOX1Q9UHG3 505 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 ZKSCAN5Q9Y2L8 839 aa15.53■□□□□ 0.08
CLN3-208ENST00000561505 SCN2AQ99250 2005 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 HAT1O14929 419 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 PFDN6O15212 129 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 SLC19A2O60779 497 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 F10P00742 488 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 MPC1LP0DKB6 136 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 MGAT1P26572 445 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 MAT1AQ00266 395 aaKnown RBP15.52■□□□□ 0.08
CLN3-208ENST00000561505 SNX1Q13596 522 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 PTK6Q13882 451 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 NDUFA9Q16795 377 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 LONRF1Q17RB8 773 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 ZNF766Q5HY98 468 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 SHISA5Q8N114 240 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 GIMAP7Q8NHV1 300 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 M1APQ8TC57 530 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 RERGQ96A58 199 aaPredicted RBP15.52■□□□□ 0.08
CLN3-208ENST00000561505 THAP11Q96EK4 314 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 ZNF354BQ96LW1 612 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 GPR137Q96N19 417 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 SLC30A3Q99726 388 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 TREX2Q9BQ50 279 aaPredicted RBP15.52■□□□□ 0.08
CLN3-208ENST00000561505 IGSF5Q9NSI5 407 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 TMEM184CQ9NVA4 438 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 INTS10Q9NVR2 710 aaKnown RBP15.52■□□□□ 0.08
CLN3-208ENST00000561505 SYBUQ9NX95 663 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 CRYL1Q9Y2S2 319 aa15.52■□□□□ 0.08
CLN3-208ENST00000561505 PCNX1Q96RV3 2341 aa15.52■□□□□ 0.07
CLN3-208ENST00000561505 KIF5CO60282 957 aa15.51■□□□□ 0.07
CLN3-208ENST00000561505 CHRM3P20309 590 aa15.51■□□□□ 0.07
CLN3-208ENST00000561505 BCL6P41182 706 aa15.51■□□□□ 0.07
CLN3-208ENST00000561505 AVPR1BP47901 424 aa15.51■□□□□ 0.07
CLN3-208ENST00000561505 TUBA3CQ13748 450 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms