RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ADAMTS6Q9UKP5 1117 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 MAN2B2Q9Y2E5 1009 aa11.37□□□□□ -0.59
LDLR-212ENST00000560467 ARHGEF17Q96PE2 2063 aaPredicted RBP11.37□□□□□ -0.59
LDLR-212ENST00000560467 ARHGEF33A8MVX0 844 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 NDUFAB1O14561 156 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 KLK8O60259 260 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 SHOX2O60902 331 aaPredicted RBP11.36□□□□□ -0.59
LDLR-212ENST00000560467 OTCP00480 354 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 VIPP01282 170 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 NTRK1P04629 796 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 MTHFD1P11586 935 aaKnown RBP11.36□□□□□ -0.59
LDLR-212ENST00000560467 ACADLP28330 430 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 RAB15P59190 212 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 GPLD1P80108 840 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 LCP2Q13094 533 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 TSTA3Q13630 321 aaPredicted RBP11.36□□□□□ -0.59
LDLR-212ENST00000560467 RPE65Q16518 533 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 PHKG1Q16816 387 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 PPP1R3AQ16821 1122 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 ZNF678Q5SXM1 525 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 LRRC70Q7Z2Q7 622 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 TIPARPQ7Z3E1 657 aaKnown RBP11.36□□□□□ -0.59
LDLR-212ENST00000560467 NLGN4XQ8N0W4 816 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 LILRA3Q8N6C8 439 aaPredicted RBP11.36□□□□□ -0.59
LDLR-212ENST00000560467 NLGN4YQ8NFZ3 816 aaPredicted RBP11.36□□□□□ -0.59
LDLR-212ENST00000560467 KIAA1143Q96AT1 154 aaPredicted RBP11.36□□□□□ -0.59
LDLR-212ENST00000560467 RHBDF1Q96CC6 855 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 FBXL8Q96CD0 374 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 C7orf26Q96N11 449 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 SLC38A3Q99624 504 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 MIPEPQ99797 713 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 DPYSL5Q9BPU6 564 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 SIKE1Q9BRV8 207 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 GATA5Q9BWX5 397 aaPredicted RBP11.36□□□□□ -0.59
LDLR-212ENST00000560467 TRIM55Q9BYV6 548 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 SPRY4Q9C004 299 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 APMAPQ9HDC9 416 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 SPATA7Q9P0W8 599 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 PDP2Q9P2J9 529 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 VTI1BQ9UEU0 232 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 TBC1D29Q9UFV1 150 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 PTBP2Q9UKA9 531 aaKnown RBP11.36□□□□□ -0.59
LDLR-212ENST00000560467 DYRK1BQ9Y463 629 aa11.36□□□□□ -0.59
LDLR-212ENST00000560467 PCYT1BQ9Y5K3 369 aaPredicted RBP11.36□□□□□ -0.59
LDLR-212ENST00000560467 SPTBN1Q01082 2364 aaKnown RBP11.36□□□□□ -0.59
LDLR-212ENST00000560467 ZNF106Q9H2Y7 1883 aaKnown RBP11.36□□□□□ -0.59
LDLR-212ENST00000560467 NBPF19A0A087WUL8 3843 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 K7EPI3 171 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 MYO1CO00159 1063 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 CLGNO14967 610 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 CAPN5O15484 640 aaPredicted RBP11.35□□□□□ -0.59
LDLR-212ENST00000560467 WDR47O94967 919 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 FAM107AO95990 144 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 SBK3P0C264 359 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 MTHFD2P13995 350 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 SHMT2P34897 504 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 GGT5P36269 586 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 FASLGP48023 281 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 RPL14P50914 215 aaKnown RBP11.35□□□□□ -0.59
LDLR-212ENST00000560467 PKNOX1P55347 436 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 MC2RQ01718 297 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 CLCQ05315 142 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 GALNT1Q10472 559 aaPredicted RBP11.35□□□□□ -0.59
LDLR-212ENST00000560467 PRKG2Q13237 762 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 PCBP2Q15366 365 aaKnown RBP eCLIP11.35□□□□□ -0.59
LDLR-212ENST00000560467 ZNF658BQ4V348 819 aaPredicted RBP11.35□□□□□ -0.59
LDLR-212ENST00000560467 LACTB2Q53H82 288 aaPredicted RBP11.35□□□□□ -0.59
LDLR-212ENST00000560467 ARL13AQ5H913 290 aaPredicted RBP11.35□□□□□ -0.59
LDLR-212ENST00000560467 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.35□□□□□ -0.59
LDLR-212ENST00000560467 ARMC6Q6NXE6 501 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 KLHL35Q6PF15 583 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 AGTRAPQ6RW13 159 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 ZCCHC23Q6ZST2 131 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 FAM47EQ6ZV65 393 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 LRRC34Q8IZ02 419 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 SFRP1Q8N474 314 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 TEX9Q8N6V9 391 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 SPDYE1Q8NFV5 336 aaPredicted RBP11.35□□□□□ -0.59
LDLR-212ENST00000560467 OR10G6Q8NH81 332 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 BCAS4Q8TDM0 211 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 LCN9Q8WX39 176 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 STARD8Q92502 1023 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 ABHD17AQ96GS6 310 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 AHCYL2Q96HN2 611 aaKnown RBP11.35□□□□□ -0.59
LDLR-212ENST00000560467 TMEM237Q96Q45 408 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 TEFMQ96QE5 360 aaKnown RBP11.35□□□□□ -0.59
LDLR-212ENST00000560467 INSM2Q96T92 566 aaPredicted RBP11.35□□□□□ -0.59
LDLR-212ENST00000560467 PLCD4Q9BRC7 762 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 HAUS8Q9BT25 410 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.35□□□□□ -0.59
LDLR-212ENST00000560467 MID1IP1Q9NPA3 183 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 CCDC177Q9NQR7 707 aaPredicted RBP11.35□□□□□ -0.59
LDLR-212ENST00000560467 DNAJC11Q9NVH1 559 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 FGFR1OP2Q9NVK5 253 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 KLHL3Q9UH77 587 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 IKZF3Q9UKT9 509 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 RAP2CQ9Y3L5 183 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 MRPS18BQ9Y676 258 aaKnown RBP11.35□□□□□ -0.59
LDLR-212ENST00000560467 KCNE2Q9Y6J6 123 aa11.35□□□□□ -0.59
LDLR-212ENST00000560467 SPENQ96T58 3664 aaKnown RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms