RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ZNF7P17097 686 aaPredicted RBP10.98□□□□□ -0.65
LDLR-208ENST00000558518 TNFSF8P32971 234 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 GJA5P36382 358 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 MAD2L1Q13257 205 aaPredicted RBP10.98□□□□□ -0.65
LDLR-208ENST00000558518 TAF1AQ15573 450 aaPredicted RBP10.98□□□□□ -0.65
LDLR-208ENST00000558518 HKDC1Q2TB90 917 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 LEXMQ3ZCV2 418 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 MEX3DQ86XN8 651 aaKnown RBP10.98□□□□□ -0.65
LDLR-208ENST00000558518 GALNT13Q8IUC8 556 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 CCDC117Q8IWD4 279 aaPredicted RBP10.98□□□□□ -0.65
LDLR-208ENST00000558518 LGI4Q8N135 537 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 DIRAS2Q96HU8 199 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 NIPSNAP1Q9BPW8 284 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 SP140LQ9H930 580 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 UCKL1Q9NWZ5 548 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 SPASTQ9UBP0 616 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 RAB23Q9ULC3 237 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 PPT2Q9UMR5 302 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 DOCK3Q8IZD9 2030 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 SLC35F4A4IF30 521 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 MYADML2A6NDP7 307 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 CLDN7O95471 211 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 CLDN9O95484 217 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 F2P00734 622 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 CCNYL3P0C7X3 344 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 GRIK2Q13002 908 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 NADSYN1Q6IA69 706 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 SBSNQ6UWP8 590 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 PHF21AQ96BD5 680 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 MGLLQ99685 303 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 TM9SF3Q9HD45 589 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 FZD4Q9ULV1 537 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 DOCK1Q14185 1865 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 THSD7AQ9UPZ6 1657 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 CCNDBP1O95273 360 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 NPPAP01160 153 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 HIST1H2AGP0C0S8 130 aaPredicted RBP10.98□□□□□ -0.65
LDLR-208ENST00000558518 TSPAN19P0C672 248 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 ADORA3P0DMS8 318 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 RPL17P18621 184 aaKnown RBP10.98□□□□□ -0.65
LDLR-208ENST00000558518 HIST1H2ADP20671 130 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 PTNP21246 168 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 MRPS6P82932 125 aaKnown RBP10.98□□□□□ -0.65
LDLR-208ENST00000558518 CBX2Q14781 532 aaPredicted RBP10.98□□□□□ -0.65
LDLR-208ENST00000558518 VMACQ2NL98 169 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 RNASE12Q5GAN4 147 aaKnown RBP10.98□□□□□ -0.65
LDLR-208ENST00000558518 TYW3Q6IPR3 259 aaKnown RBP10.98□□□□□ -0.65
LDLR-208ENST00000558518 SNX20Q7Z614 316 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 TSPYL5Q86VY4 417 aaPredicted RBP10.98□□□□□ -0.65
LDLR-208ENST00000558518 ENKURQ8TC29 256 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 FOXJ1Q92949 421 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 HIST1H2AHQ96KK5 128 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 PKP4Q99569 1192 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 HIST1H2AJQ99878 128 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 H2AFJQ9BTM1 129 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 ASPNQ9BXN1 380 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 IL1RAPQ9NPH3 570 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 PCDHGA6Q9Y5G7 932 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 PEX16Q9Y5Y5 336 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 LYVE1Q9Y5Y7 322 aa10.98□□□□□ -0.65
LDLR-208ENST00000558518 A0A1W2PQ09 198 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 LAMP1P11279 417 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 PBLDP30039 288 aaPredicted RBP10.97□□□□□ -0.65
LDLR-208ENST00000558518 RGS6P49758 472 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 SGSHP51688 502 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 POM121L1PQ3SYA9 428 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 PARP15Q460N3 678 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 ADNP2Q6IQ32 1131 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 PNCKQ6P2M8 343 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 ELMOD2Q8IZ81 293 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 CELF5Q8N6W0 485 aaKnown RBP10.97□□□□□ -0.65
LDLR-208ENST00000558518 BEND7Q8N7W2 519 aaPredicted RBP10.97□□□□□ -0.65
LDLR-208ENST00000558518 ZFP41Q8N8Y5 198 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 GLB1L3Q8NCI6 653 aaPredicted RBP10.97□□□□□ -0.65
LDLR-208ENST00000558518 COQ8BQ96D53 544 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 CPPED1Q9BRF8 314 aaPredicted RBP10.97□□□□□ -0.65
LDLR-208ENST00000558518 PCDH10Q9P2E7 1040 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 COMMD3Q9UBI1 195 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 RPS6KA6Q9UK32 745 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 A0A1W2PQ72 361 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 ERN1O75460 977 aaKnown RBP10.97□□□□□ -0.65
LDLR-208ENST00000558518 PSIP1O75475 530 aaKnown RBP10.97□□□□□ -0.65
LDLR-208ENST00000558518 PTTG1O95997 202 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 IGFBP1P08833 259 aaPredicted RBP10.97□□□□□ -0.65
LDLR-208ENST00000558518 PSKH1P11801 424 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 SDC1P18827 310 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 SLC6A4P31645 630 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 ABHD18Q0P651 414 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 IRF3Q14653 427 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 BAK1Q16611 211 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 TYSND1Q2T9J0 566 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 SPDYE7PQ495Y7 208 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 CEP78Q5JTW2 689 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 C10orf62Q5T681 223 aaPredicted RBP10.97□□□□□ -0.65
LDLR-208ENST00000558518 LIPKQ5VXJ0 399 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 KDM4DQ6B0I6 523 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 FAM171BQ6P995 826 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 ANKS3Q6ZW76 656 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 NLRP8Q86W28 1048 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 C2orf73Q8N5S3 287 aaPredicted RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms