RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ZNF621Q6ZSS3 439 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 ANKS3Q6ZW76 656 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 ZNF367Q7RTV3 350 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 PARP16Q8N5Y8 322 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 C2orf69Q8N8R5 385 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 VPS37AQ8NEZ2 397 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 ZNF675Q8TD23 568 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 APIPQ96GX9 242 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 B3GALT6Q96L58 329 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 APOLD1Q96LR9 279 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 DOHHQ9BU89 302 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 CDADC1Q9BWV3 514 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 BTNL2Q9UIR0 455 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 NOD1Q9Y239 953 aa15.76■□□□□ 0.11
SHMT2-231ENST00000557433 COCHO43405 550 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 KCNK2O95069 426 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 ALPIP09923 528 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 JUPP14923 745 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 ZNF24P17028 368 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 CASP3P42574 277 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 TUFMP49411 452 aaKnown RBP15.75■□□□□ 0.11
SHMT2-231ENST00000557433 SGSHP51688 502 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 UGT2B15P54855 530 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 WNT3P56703 355 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 KCNJ10P78508 379 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 UGT8Q16880 541 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 ZNF362Q5T0B9 420 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-231ENST00000557433 MFSD14CQ5VZR4 134 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 LINGO4Q6UY18 593 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 METTL3Q86U44 580 aaKnown RBP15.75■□□□□ 0.11
SHMT2-231ENST00000557433 RTN4RL1Q86UN2 441 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-231ENST00000557433 RASAL3Q86YV0 1011 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 DCAF4L2Q8NA75 395 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 ATL1Q8WXF7 558 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 GGHQ92820 318 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 ZNF486Q96H40 463 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-231ENST00000557433 RUBCNLQ9H714 662 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 DNAJC11Q9NVH1 559 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 SIRT5Q9NXA8 310 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 ZDHHC3Q9NYG2 299 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.75■□□□□ 0.11
SHMT2-231ENST00000557433 RUVBL1Q9Y265 456 aaKnown RBP15.75■□□□□ 0.11
SHMT2-231ENST00000557433 CFL2Q9Y281 166 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 VWA8A3KMH1 1905 aa15.75■□□□□ 0.11
SHMT2-231ENST00000557433 DSCR3O14972 297 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 DIRAS1O95057 198 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 DBTP11182 482 aaKnown RBP15.74■□□□□ 0.11
SHMT2-231ENST00000557433 HSD3B1P14060 373 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 COX7A2P14406 83 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 BPIP17213 487 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 ATF6P18850 670 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 POLR2EP19388 210 aaKnown RBP15.74■□□□□ 0.11
SHMT2-231ENST00000557433 HSD3B2P26439 372 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 ASMTP46597 345 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 AP1S2P56377 157 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 BCL2L1Q07817 233 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 IRF3Q14653 427 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 TAF1CQ15572 869 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-231ENST00000557433 CHRNA6Q15825 494 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 CDKN3Q16667 212 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 SPANXN2Q5MJ10 180 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 ANXA8L1Q5VT79 327 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 LIPJQ5W064 366 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 PDE12Q6L8Q7 609 aaKnown RBP15.74■□□□□ 0.11
SHMT2-231ENST00000557433 C17orf99Q6UX52 265 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 UBE2R2Q712K3 238 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-231ENST00000557433 CAMKMTQ7Z624 323 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 ZNF605Q86T29 641 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 MMAAQ8IVH4 418 aaKnown RBP15.74■□□□□ 0.11
SHMT2-231ENST00000557433 FLCNQ8NFG4 579 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 SETD6Q8TBK2 473 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 CCDC97Q96F63 343 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-231ENST00000557433 LYSMD1Q96S90 227 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 GPR62Q9BZJ7 368 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 TPT1P8Q9HAU6 139 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 CRNNQ9UBG3 495 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-231ENST00000557433 POU2F3Q9UKI9 436 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 MPZL2O60487 215 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 TSPAN3O60637 253 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 AOC2O75106 756 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 GJB5O95377 273 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 ASGR1P07306 291 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 ALDH9A1P49189 494 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 KCNC3Q14003 757 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 METTL4Q8N3J2 472 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 CHST8Q9H2A9 424 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 TMEM161AQ9NX61 479 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 TRAPPC4Q9Y296 219 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 GRIP1Q9Y3R0 1128 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 PCDHGB6Q9Y5F9 930 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 OR51B4Q9Y5P0 310 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 LYVE1Q9Y5Y7 322 aa15.74■□□□□ 0.11
SHMT2-231ENST00000557433 PLXNA4Q9HCM2 1894 aa15.73■□□□□ 0.11
SHMT2-231ENST00000557433 A0A075B6Q4 140 aa15.73■□□□□ 0.11
SHMT2-231ENST00000557433 A0A0U1RQS6 177 aa15.73■□□□□ 0.11
SHMT2-231ENST00000557433 SH3D21A4FU49 640 aa15.73■□□□□ 0.11
SHMT2-231ENST00000557433 EFCAB10A6NFE3 127 aa15.73■□□□□ 0.11
SHMT2-231ENST00000557433 TNFRSF11BO00300 401 aa15.73■□□□□ 0.11
SHMT2-231ENST00000557433 ADAMTS4O75173 837 aa15.73■□□□□ 0.11
SHMT2-231ENST00000557433 LRATO95237 230 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms