RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CUTCQ9NTM9 273 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 DNAJC11Q9NVH1 559 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 DHCR7Q9UBM7 475 aaKnown RBP12.99□□□□□ -0.33
SHMT2-228ENST00000557302 TBK1Q9UHD2 729 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 PTBP2Q9UKA9 531 aaKnown RBP12.99□□□□□ -0.33
SHMT2-228ENST00000557302 RAB21Q9UL25 225 aa12.99□□□□□ -0.33
SHMT2-228ENST00000557302 KCNE1BA0A087WTH5 132 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 A0A1B0GX78 115 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 HYKKA2RU49 373 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 FITM1A5D6W6 292 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 SMIM23A6NLE4 172 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 C21orf140B9A014 251 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 TXNDC9O14530 226 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 CCNT2O60583 730 aaKnown RBP12.98□□□□□ -0.33
SHMT2-228ENST00000557302 RBP1P09455 135 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 GFAPP14136 432 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 GNAZP19086 355 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 TCN2P20062 427 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 ALAS2P22557 587 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 GCGRP47871 477 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 HSPA7P48741 367 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 VAC14Q08AM6 782 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 CDC16Q13042 620 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 DNASE1L3Q13609 305 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 PDK4Q16654 411 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 FAM214AQ32MH5 1076 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 FBXO48Q5FWF7 155 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 TECRLQ5HYJ1 363 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 CATSPEREQ5SY80 951 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 C1orf189Q5VU69 101 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 ZNF385CQ66K41 422 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-228ENST00000557302 NXPE4Q6UWF7 544 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 ZNF517Q6ZMY9 492 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-228ENST00000557302 TTLL10Q6ZVT0 673 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 LRRC70Q7Z2Q7 622 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 TMPRSS11BQ86T26 416 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 OR4K1Q8NGD4 311 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 UBTD2Q8WUN7 234 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 ESAMQ96AP7 390 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 CRELD1Q96HD1 420 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 SLC45A3Q96JT2 553 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 SCYL1Q96KG9 808 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 GBP5Q96PP8 586 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 CAPS2Q9BXY5 557 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 NLNQ9BYT8 704 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 AKIRIN1Q9H9L7 192 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-228ENST00000557302 ZNF358Q9NW07 568 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 GPRC5BQ9NZH0 403 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 NDOR1Q9UHB4 597 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 IL17BQ9UHF5 180 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 KCND3Q9UK17 655 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 PCDHGA4Q9Y5G9 962 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 SEC16AO15027 2179 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 HEATR5BQ9P2D3 2071 aa12.98□□□□□ -0.33
SHMT2-228ENST00000557302 FEZF1A0PJY2 475 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 C9J4A7 227 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 K7ENP7 123 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 MAP2K7O14733 419 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 TERTO14746 1132 aaKnown RBP12.97□□□□□ -0.33
SHMT2-228ENST00000557302 DSCR3O14972 297 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 CDH16O75309 829 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 KATNA1O75449 491 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 NUDT17P0C025 328 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 MTHFD2P13995 350 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 WT1P19544 449 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-228ENST00000557302 BCL6P41182 706 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 AGTR2P50052 363 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 EMP3P54852 163 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 RPS15P62841 145 aaKnown RBP12.97□□□□□ -0.33
SHMT2-228ENST00000557302 DCDP81605 110 aaKnown RBP12.97□□□□□ -0.33
SHMT2-228ENST00000557302 MEF2AQ02078 507 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-228ENST00000557302 IFFO1Q0D2I5 559 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 COL9A2Q14055 689 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-228ENST00000557302 RASA2Q15283 850 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 MUM1Q2TAK8 710 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 HKDC1Q2TB90 917 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 PRTGQ2VWP7 1150 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 ARHGAP40Q5TG30 622 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 INO80CQ6PI98 192 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-228ENST00000557302 VN1R4Q7Z5H5 301 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 MREGQ8N565 214 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 SNX31Q8N9S9 440 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 MFSD9Q8NBP5 474 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 ACMSDQ8TDX5 336 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 EPS8L3Q8TE67 593 aaKnown RBP12.97□□□□□ -0.33
SHMT2-228ENST00000557302 MZB1Q8WU39 189 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 C17orf62Q9BQA9 187 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 AIF1LQ9BQI0 150 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 GPR87Q9BY21 358 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 CD244Q9BZW8 370 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 FAM117AQ9C073 453 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 PRORYQ9H606 182 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 SYNPO2LQ9H987 977 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 CPSF2Q9P2I0 782 aaKnown RBP12.97□□□□□ -0.33
SHMT2-228ENST00000557302 XPR1Q9UBH6 696 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 TMCO1Q9UM00 188 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 RUVBL1Q9Y265 456 aaKnown RBP12.97□□□□□ -0.33
SHMT2-228ENST00000557302 PCDHGA6Q9Y5G7 932 aa12.97□□□□□ -0.33
SHMT2-228ENST00000557302 TRBC2A0A5B9 178 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 ZNF891A8MT65 544 aaPredicted RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms