RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 SPATA21Q7Z572 469 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 PRSS42Q7Z5A4 293 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 ALYREFQ86V81 257 aaKnown RBP10.76□□□□□ -0.69
SHMT2-220ENST00000555634 TRPV3Q8NET8 790 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 NETO1Q8TDF5 533 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 RILPQ96NA2 401 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 TMEM74Q96NL1 305 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 PRAP1Q96NZ9 151 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 ZNF317Q96PQ6 595 aaPredicted RBP10.76□□□□□ -0.69
SHMT2-220ENST00000555634 SORT1Q99523 831 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 ZFYVE21Q9BQ24 234 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 LRRN3Q9H3W5 708 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 NT5DC2Q9H857 520 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 BRF2Q9HAW0 419 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 SLC6A20Q9NP91 592 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 CUEDC1Q9NWM3 386 aaPredicted RBP10.76□□□□□ -0.69
SHMT2-220ENST00000555634 GEMIN8Q9NWZ8 242 aaKnown RBP10.76□□□□□ -0.69
SHMT2-220ENST00000555634 KLHL3Q9UH77 587 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 BTBD3Q9Y2F9 522 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 RNF11Q9Y3C5 154 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 RP1P56715 2156 aa10.76□□□□□ -0.69
SHMT2-220ENST00000555634 UNC13CQ8NB66 2214 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.75□□□□□ -0.69
SHMT2-220ENST00000555634 D6RAR5 112 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 TMX2-CTNND1H3BSU7 103 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 MANBAO00462 879 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 UBFD1O14562 309 aaKnown RBP10.75□□□□□ -0.69
SHMT2-220ENST00000555634 SH3BP5O60239 455 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 WFS1O76024 890 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 MYO1DO94832 1006 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 SERPIND1P05546 499 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 CD59P13987 128 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 EPORP19235 508 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 SDHBP21912 280 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 VARSP26640 1264 aaKnown RBP10.75□□□□□ -0.69
SHMT2-220ENST00000555634 PEBP1P30086 187 aaKnown RBP10.75□□□□□ -0.69
SHMT2-220ENST00000555634 GRIA3P42263 894 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 CCR10P46092 362 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 SEC24CP53992 1094 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 AQP5P55064 265 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 STXBP1P61764 594 aaKnown RBP10.75□□□□□ -0.69
SHMT2-220ENST00000555634 HSD11B2P80365 405 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 RELAQ04206 551 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 CYP4F3Q08477 520 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 TRA2AQ13595 282 aaKnown RBP eCLIP10.75□□□□□ -0.69
SHMT2-220ENST00000555634 NR6A1Q15406 480 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 CCDC157Q569K6 752 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 SGO1Q5FBB7 561 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 SPDYAQ5MJ70 313 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 SNAP47Q5SQN1 464 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 PERM1Q5SV97 790 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 PHF19Q5T6S3 580 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 NKAIN2Q5VXU1 208 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 KIAA1614Q5VZ46 1190 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 NXNQ6DKJ4 435 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 TMEM71Q6P5X7 295 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 FIGLAQ6QHK4 219 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 DBX2Q6ZNG2 339 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 RBM44Q6ZP01 1051 aaKnown RBP10.75□□□□□ -0.69
SHMT2-220ENST00000555634 RNF165Q6ZSG1 346 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 TRIM73Q86UV7 250 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.75□□□□□ -0.692e-6■■■■■ 41.4
SHMT2-220ENST00000555634 FAM9CQ8IZT9 166 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 LSMEM2Q8N112 164 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 OR4D9Q8NGE8 314 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 BAHD1Q8TBE0 780 aaPredicted RBP10.75□□□□□ -0.69
SHMT2-220ENST00000555634 BCAS4Q8TDM0 211 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 TUBGCP3Q96CW5 907 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 PPP3R2Q96LZ3 170 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 SERPINI1Q99574 410 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 NUF2Q9BZD4 464 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 STRADBQ9C0K7 418 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 COPS7BQ9H9Q2 264 aaPredicted RBP10.75□□□□□ -0.69
SHMT2-220ENST00000555634 PARD6AQ9NPB6 346 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 PNPOQ9NVS9 261 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 AHSPQ9NZD4 102 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 ZDHHC2Q9UIJ5 367 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 DCTN4Q9UJW0 460 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 CDV3Q9UKY7 258 aaKnown RBP10.75□□□□□ -0.69
SHMT2-220ENST00000555634 OTOGLQ3ZCN5 2332 aa10.75□□□□□ -0.69
SHMT2-220ENST00000555634 ASCC3Q8N3C0 2202 aaKnown RBP10.74□□□□□ -0.69
SHMT2-220ENST00000555634 WDFY4Q6ZS81 3184 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 ARHGAP10A1A4S6 786 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 OR2A25A4D2G3 310 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 TMEM233B4DJY2 109 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 HAT1O14929 419 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 PIP5K1BO14986 540 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 NDUFS4O43181 175 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 PRICKLE3O43900 615 aaPredicted RBP10.74□□□□□ -0.69
SHMT2-220ENST00000555634 ANKRD34CP0C6C1 535 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 MYF5P13349 255 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 PCSK2P16519 638 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 CD1CP29017 333 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 CSF2RBP32927 897 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 ACADVLP49748 655 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 ARFIP2P53365 341 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 GFERP55789 205 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 STX1BP61266 288 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 CSNK1G2P78368 415 aa10.74□□□□□ -0.69
SHMT2-220ENST00000555634 IRX1P78414 480 aaPredicted RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms