RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 TRPC4Q9UBN4 977 aa17.32■□□□□ 0.36
SHMT2-206ENST00000553529 C3orf18Q9UK00 162 aa17.32■□□□□ 0.36
SHMT2-206ENST00000553529 VWA7Q9Y334 891 aa17.32■□□□□ 0.36
SHMT2-206ENST00000553529 ZNF451Q9Y4E5 1061 aa17.32■□□□□ 0.36
SHMT2-206ENST00000553529 DOCK10Q96BY6 2186 aa17.32■□□□□ 0.36
SHMT2-206ENST00000553529 IGHV3-20A0A0C4DH32 117 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 FAM95CA0A1B0GW59 222 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 ZNF860A6NHJ4 632 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 EZRP15311 586 aaKnown RBP17.31■□□□□ 0.36
SHMT2-206ENST00000553529 IL1RNP18510 177 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 TAS2R39P59534 338 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 MGAT5Q09328 741 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 MYBPC3Q14896 1274 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 EFTUD2Q15029 972 aaKnown RBP eCLIP17.31■□□□□ 0.368e-9■■■■■ 30.8
SHMT2-206ENST00000553529 RBBP7Q16576 425 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 MUM1Q2TAK8 710 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 FAM214AQ32MH5 1076 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 CATSPEREQ5SY80 951 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 YOD1Q5VVQ6 348 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-206ENST00000553529 SBSNQ6UWP8 590 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 PDSS2Q86YH6 399 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 ZC3H7AQ8IWR0 971 aaKnown RBP17.31■□□□□ 0.36
SHMT2-206ENST00000553529 CLEC1AQ8NC01 280 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 ANP32BQ92688 251 aaKnown RBP17.31■□□□□ 0.36
SHMT2-206ENST00000553529 MIEF2Q96C03 454 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 TSNARE1Q96NA8 513 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 SGPP1Q9BX95 441 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 RBCK1Q9BYM8 510 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 ZNF160Q9HCG1 818 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 SAYSD1Q9NPB0 183 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 MOCS1Q9NZB8 636 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 HCN3Q9P1Z3 774 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 ANKMY1Q9P2S6 941 aa17.31■□□□□ 0.36
SHMT2-206ENST00000553529 SGK494L7N484 410 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 FAM155BO75949 473 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 CCNDBP1O95273 360 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 C1QAP02745 245 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 ALBP02768 609 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 C8GP07360 202 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 NPPBP16860 134 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 HSD17B2P37059 387 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 RGS4P49798 205 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 SRSF11Q05519 484 aaKnown RBP17.3■□□□□ 0.36
SHMT2-206ENST00000553529 MRPL49Q13405 166 aaKnown RBP17.3■□□□□ 0.36
SHMT2-206ENST00000553529 VWA5B1Q5TIE3 1220 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 FAM45BPQ6NSW5 357 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 UGT3A1Q6NUS8 523 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 KIAA0408Q6ZU52 694 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 FAM45AQ8TCE6 357 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 MCOLN3Q8TDD5 553 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 FER1L6-AS2Q96M78 137 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 NAT9Q9BTE0 207 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 MCMBPQ9BTE3 642 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 ARL15Q9NXU5 204 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 ZFATQ9P243 1243 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 MAP10Q9P2G4 905 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 ZNF282Q9UDV7 671 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-206ENST00000553529 NTNG1Q9Y2I2 539 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 MTO1Q9Y2Z2 717 aaKnown RBP17.3■□□□□ 0.36
SHMT2-206ENST00000553529 MAP4K5Q9Y4K4 846 aa17.3■□□□□ 0.36
SHMT2-206ENST00000553529 ESYT3A0FGR9 886 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 EIF3FO00303 357 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-206ENST00000553529 KLHL18O94889 574 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 F10P00742 488 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 COX6A1P12074 109 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 ZNF37AP17032 561 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-206ENST00000553529 SLC26A3P40879 764 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 GPX6P59796 221 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 IL2P60568 153 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 ABATP80404 500 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 SP140Q13342 867 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 DSG2Q14126 1118 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 INPP5JQ15735 1006 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-206ENST00000553529 PPP1R3AQ16821 1122 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 ZDHHC24Q6UX98 284 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 LANCL3Q6ZV70 420 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 GALNT7Q86SF2 657 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 CUZD1Q86UP6 607 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 SLC26A11Q86WA9 606 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 OR5T3Q8NGG3 340 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 RERGQ96A58 199 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-206ENST00000553529 TMEM184CQ9NVA4 438 aa17.29■□□□□ 0.36
SHMT2-206ENST00000553529 IGLV3-12A0A075B6K2 115 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 ZNF839A8K0R7 811 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 IDSB3KWA1 339 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 C4orf51C9J302 202 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 PHGDHO43175 533 aaKnown RBP17.28■□□□□ 0.36
SHMT2-206ENST00000553529 DPM1O60762 260 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 CASQ1P31415 396 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 OLR1P78380 273 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 SLC7A5Q01650 507 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 TSNQ15631 228 aaKnown RBP17.28■□□□□ 0.36
SHMT2-206ENST00000553529 TUBB8Q3ZCM7 444 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 DUPD1Q68J44 220 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 HIST2H2BCQ6DN03 193 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 PRMT9Q6P2P2 845 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 LINC00696Q6ZRV3 163 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 CISD2Q8N5K1 135 aaKnown RBP17.28■□□□□ 0.36
SHMT2-206ENST00000553529 OR56A3Q8NH54 315 aa17.28■□□□□ 0.36
SHMT2-206ENST00000553529 THOC3Q96J01 351 aaKnown RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms