RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 GALNT12Q8IXK2 581 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 FSTL5Q8N475 847 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 NATD1Q8N6N6 113 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 BEND7Q8N7W2 519 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 LSMEM1Q8N8F7 131 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PAPD5Q8NDF8 572 aaKnown RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TMIEQ8NEW7 156 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 OR2AP1Q8NGE2 309 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 OR9I1Q8NGQ6 314 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 SPATA22Q8NHS9 363 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PROX1Q92786 737 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 FOXJ1Q92949 421 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 FAM131CQ96AQ9 280 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 ELMO2Q96JJ3 720 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 UBXN10Q96LJ8 280 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 ORAI3Q9BRQ5 295 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TMEM246Q9BRR3 403 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 CCDC90BQ9GZT6 254 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 SLA2Q9H6Q3 261 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 SGK2Q9HBY8 427 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 GLOD4Q9HC38 313 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 NT5MQ9NPB1 228 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 FKBP14Q9NWM8 211 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 ADPRHL2Q9NX46 363 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 XPR1Q9UBH6 696 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 LHX3Q9UBR4 397 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 UBA2Q9UBT2 640 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 EVLQ9UI08 416 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PCDHGA8Q9Y5G5 932 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 NCOR2Q9Y618 2525 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TBC1D3DA0A087WVF3 549 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TBC1D3IA0A087WXS9 549 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TBC1D3EA0A087X179 549 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TBC1D3KA0A087X1G2 549 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TBC1D3FA6NER0 549 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 FAM25AB3EWG3 89 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 FAM25CB3EWG5 89 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 FAM25GB3EWG6 89 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 C10orf142B7Z368 130 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 B8ZZF3 427 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TBC1D3LB9A6J9 549 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 C1QTNF3-AMACRE9PGA6 284 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 CDK2AP1O14519 115 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 WNT9AO14904 365 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 ANGPT2O15123 496 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 USP12O75317 370 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 MT-CYBP00156 380 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 CFIP05156 583 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 HLA-DQB2P05538 268 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TBC1D3HP0C7X1 549 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 SAT1P21673 171 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PCMT1P22061 227 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 MAT2AP31153 395 aaKnown RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 RRM2P31350 389 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 ATP4BP51164 291 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 MAXP61244 160 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 RHOAP61586 193 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 SNRPD1P62314 119 aaKnown RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 DAG1Q14118 895 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 SUZ12Q15022 739 aaKnown RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 NPTX1Q15818 432 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 SPATS1Q496A3 300 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 LRRC73Q5JTD7 316 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 FAM46CQ5VWP2 391 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PEAR1Q5VY43 1037 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TTC23Q5W5X9 447 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TBC1D3GQ6DHY5 549 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TBC1D3CQ6IPX1 549 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 CNSTQ6PJW8 725 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 CCBE1Q6UXH8 406 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PRSS48Q7RTY5 328 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 RETREG3Q86VR2 466 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 P2RY8Q86VZ1 359 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TBC1D3Q8IZP1 549 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 CLEC4FQ8N1N0 589 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 MINDY1Q8N5J2 469 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 CHDHQ8NE62 594 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 ZNF555Q8NEP9 628 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 ACVR1CQ8NER5 493 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 OR2I1PQ8NGU4 316 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 OR6F1Q8NGZ6 308 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 MCFD2Q8NI22 146 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 KCTD4Q8WVF5 259 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 JPH3Q8WXH2 748 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 RORBQ92753 470 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 FCRL5Q96RD9 977 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 SLC30A3Q99726 388 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 KCTD14Q9BQ13 255 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 APOL2Q9BQE5 337 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 MLPHQ9BV36 600 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 BTBD2Q9BX70 525 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 EML4Q9HC35 981 aaKnown RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 KCNN3Q9UGI6 736 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 FZD4Q9ULV1 537 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 NDUFAF1Q9Y375 327 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 SPEF1Q9Y4P9 236 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PCDHB3Q9Y5E6 796 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PLXNA2O75051 1894 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 CELSR3Q9NYQ7 3312 aa7.42□□□□□ -1.22
LIMA1-216ENST00000552909 FRYQ5TBA9 3013 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms