RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 BHLHB9Q6PI77 547 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 TMIGD1Q6UXZ0 262 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 CPA6Q8N4T0 437 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 TADA1Q96BN2 335 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 PRICKLE1Q96MT3 831 aaPredicted RBP15.19■□□□□ 0.02
CUX1-211ENST00000546411 TVP23BQ9NYZ1 205 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 ZNF282Q9UDV7 671 aaPredicted RBP15.19■□□□□ 0.02
CUX1-211ENST00000546411 GPR45Q9Y5Y3 372 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 ASNA1O43681 348 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 NUDT14O95848 222 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 SLC16A8O95907 504 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 BCHEP06276 602 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 DNAJA1P31689 397 aaKnown RBP15.19■□□□□ 0.02
CUX1-211ENST00000546411 UBE2J2Q8N2K1 259 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 TMEM145Q8NBT3 493 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 FRS2Q8WU20 508 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 TSPEARQ8WU66 669 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 SCRN2Q96FV2 425 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 CLDN25C9JDP6 229 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 H7BY64 318 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 MITFO75030 526 aaPredicted RBP15.19■□□□□ 0.02
CUX1-211ENST00000546411 IFNGR2P38484 337 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 RPS6KA3P51812 740 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 TARDBPQ13148 414 aaKnown RBP eCLIP15.19■□□□□ 0.029e-7■■■■□ 26.1
CUX1-211ENST00000546411 TRIQKQ629K1 86 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 LCN8Q6JVE9 175 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 GALNT13Q8IUC8 556 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 NPAS3Q8IXF0 933 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 GPR150Q8NGU9 434 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 PROKR1Q8TCW9 393 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 PRAP1Q96NZ9 151 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 EFCAB11Q9BUY7 163 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 BRINP2Q9C0B6 783 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 TRIT1Q9H3H1 467 aaKnown RBP15.19■□□□□ 0.02
CUX1-211ENST00000546411 OR10H2O60403 315 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 RASGRP1O95267 797 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 IFNA16P05015 189 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 C8orf89P0DMQ9 161 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 ZNF8P17098 575 aaPredicted RBP15.19■□□□□ 0.02
CUX1-211ENST00000546411 HTR1BP28222 390 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 TIE1P35590 1138 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 SPINT3P49223 89 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 CDK6Q00534 326 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 CTSL3PQ5NE16 218 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 ATG14Q6ZNE5 492 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 TMEM126BQ8IUX1 230 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 FUNDC1Q8IVP5 155 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 SCML4Q8N228 414 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 FAR1Q8WVX9 515 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 GLYATL1Q969I3 302 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 CMTM7Q96FZ5 175 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 XKR8Q9H6D3 395 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 MAT2BQ9NZL9 334 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 PCDHB14Q9Y5E9 798 aa15.19■□□□□ 0.02
CUX1-211ENST00000546411 TMEM189-UBE2V1I3L0A0 370 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 TBX1O43435 398 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 TSC22D2O75157 780 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 NME6O75414 186 aaPredicted RBP15.18■□□□□ 0.02
CUX1-211ENST00000546411 PDE9AO76083 593 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 PRAMEF12O95522 483 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 CCDC159P0C7I6 412 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 CBSLP0DN79 551 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 CBSP35520 551 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 RAB8AP61006 207 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 RCAN2Q14206 197 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 PON2Q15165 354 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 CEACAM20Q6UY09 585 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 ADGRG5Q8IZF4 528 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 HPS1Q92902 700 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 RHBDF1Q96CC6 855 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 TEX37Q96LM6 180 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 MARCH5Q9NX47 278 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 SLC27A6Q9Y2P4 619 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 PCDHB3Q9Y5E6 796 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 CCNB2O95067 398 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 RASAL1O95294 804 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 NR2F6P10588 404 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 AMD1P17707 334 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 RPL34P49207 117 aaKnown RBP15.18■□□□□ 0.02
CUX1-211ENST00000546411 RPS26P62854 115 aaKnown RBP15.18■□□□□ 0.02
CUX1-211ENST00000546411 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.18■□□□□ 0.02
CUX1-211ENST00000546411 NEK5Q6P3R8 708 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 ZNF730Q6ZMV8 503 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 RNF130Q86XS8 419 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 KCT2Q8NC54 265 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 LCN9Q8WX39 176 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 Q96MT0 163 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 COL11A2P13942 1736 aaPredicted RBP15.18■□□□□ 0.02
CUX1-211ENST00000546411 TRBC2A0A5B9 178 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 ZNF195O14628 629 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 MATN4O95460 622 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 APODP05090 189 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 MTAPQ13126 283 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 PLEKHM3Q6ZWE6 761 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 ZZZ3Q8IYH5 903 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 DPP10Q8N608 796 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 TEX47Q8TBZ9 253 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 SPATA5L1Q9BVQ7 753 aa15.18■□□□□ 0.02
CUX1-211ENST00000546411 KRCC1Q9NPI7 259 aaPredicted RBP15.18■□□□□ 0.02
CUX1-211ENST00000546411 GPRC5BQ9NZH0 403 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms