RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 IFNA7P01567 189 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 S100A9P06702 114 aaKnown RBP13.83□□□□□ -0.2
LIMS1-215ENST00000544547 MAP2K3P46734 347 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 EIF2B5Q13144 721 aaKnown RBP13.83□□□□□ -0.2
LIMS1-215ENST00000544547 SPATS1Q496A3 300 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 DUSP28Q4G0W2 176 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 RFTN2Q52LD8 501 aaPredicted RBP13.83□□□□□ -0.2
LIMS1-215ENST00000544547 HECTD3Q5T447 861 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 CDC73Q6P1J9 531 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 PELI3Q8N2H9 469 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 MEIOBQ8N635 442 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 CRELD1Q96HD1 420 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 MRGPRX2Q96LB1 330 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 MAGEB10Q96LZ2 347 aaPredicted RBP13.83□□□□□ -0.2
LIMS1-215ENST00000544547 HOXD1Q9GZZ0 328 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 SLCO3A1Q9UIG8 710 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 A0A1W2PQH9 124 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 ANXA8P13928 327 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 EIF2DP41214 584 aaKnown RBP13.83□□□□□ -0.2
LIMS1-215ENST00000544547 ABHD18Q0P651 414 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 BRMS1LQ5PSV4 323 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 ZNF438Q7Z4V0 828 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 ADGRD2Q7Z7M1 963 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 RTL3Q8N8U3 475 aaKnown RBP13.83□□□□□ -0.2
LIMS1-215ENST00000544547 TRPV1Q8NER1 839 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 KCTD7Q96MP8 289 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 FAM105AQ9NUU6 356 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 NUDT4Q9NZJ9 180 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 PPIEQ9UNP9 301 aaKnown RBP13.83□□□□□ -0.2
LIMS1-215ENST00000544547 NCKAP1Q9Y2A7 1128 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 NUP214P35658 2090 aaPredicted RBP13.83□□□□□ -0.2
LIMS1-215ENST00000544547 PGRMC2O15173 223 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 TNFSF8P32971 234 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 CTBSQ01459 385 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 RCAN2Q14206 197 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 SMYD5Q6GMV2 418 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 OR7D4Q8NG98 312 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 SMG7Q92540 1137 aaKnown RBP13.83□□□□□ -0.2
LIMS1-215ENST00000544547 TEX37Q96LM6 180 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 PKP4Q99569 1192 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 C1QTNF1Q9BXJ1 281 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 GSDMCQ9BYG8 508 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 NFKBIZQ9BYH8 718 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 RNF167Q9H6Y7 350 aa13.83□□□□□ -0.2
LIMS1-215ENST00000544547 ALX3O95076 343 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 CPNE6O95741 557 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 CDK10Q15131 360 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 CTU2Q2VPK5 515 aaKnown RBP13.82□□□□□ -0.2
LIMS1-215ENST00000544547 GOLGA7Q7Z5G4 137 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 TSPYL5Q86VY4 417 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-215ENST00000544547 TMEM151AQ8N4L1 468 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 OR8J3Q8NGG0 315 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 C9orf43Q8TAL5 461 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-215ENST00000544547 MAELQ96JY0 434 aaKnown RBP13.82□□□□□ -0.2
LIMS1-215ENST00000544547 FEVQ99581 238 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 PCDHA9Q9Y5H5 950 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 GPR45Q9Y5Y3 372 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 KCNE2Q9Y6J6 123 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 ARHGEF33A8MVX0 844 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 LOC730098B7Z3J9 87 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 NPPAP01160 153 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 IFNA16P05015 189 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 ACADMP11310 421 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 JUNBP17275 347 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-215ENST00000544547 HOXB6P17509 224 aaKnown RBP13.82□□□□□ -0.2
LIMS1-215ENST00000544547 CD52P31358 61 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 GHRHRQ02643 423 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 ABRAXAS2Q15018 415 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 LRRC26Q2I0M4 334 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 C18orf21Q32NC0 220 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-215ENST00000544547 IFI44LQ53G44 452 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 GPR142Q7Z601 462 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 UBE2Q1Q7Z7E8 422 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-215ENST00000544547 Q8N402 240 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 GPR151Q8TDV0 419 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 SNX18Q96RF0 628 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 CSF3RQ99062 836 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 IGKV6-21A0A0C4DH24 114 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 KCNC1P48547 511 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 MLLT10P55197 1068 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 HSF2Q03933 536 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 SETMARQ53H47 684 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-215ENST00000544547 ZNF691Q5VV52 312 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 C22orf42Q6IC83 251 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 GDPD3Q7L5L3 318 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 CLDN19Q8N6F1 224 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 POP5Q969H6 163 aaKnown RBP13.82□□□□□ -0.2
LIMS1-215ENST00000544547 MED30Q96HR3 178 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 CNDP2Q96KP4 475 aaKnown RBP13.82□□□□□ -0.2
LIMS1-215ENST00000544547 RP1L1Q8IWN7 2480 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-215ENST00000544547 SGTAO43765 313 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 RPIAP49247 311 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 MRPS6P82932 125 aaKnown RBP13.82□□□□□ -0.2
LIMS1-215ENST00000544547 SEMG2Q02383 582 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 SOX4Q06945 474 aaPredicted RBP13.82□□□□□ -0.2
LIMS1-215ENST00000544547 GPAT3Q53EU6 434 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 KAT2AQ92830 837 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 AMBRA1Q9C0C7 1298 aa13.82□□□□□ -0.2
LIMS1-215ENST00000544547 RIMKLBQ9ULI2 386 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms