RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 COPZ2Q9P299 210 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 PLEKHA6Q9Y2H5 1048 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 YIPF1Q9Y548 306 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 FAM172BPA6NC97 362 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 FAAHO00519 579 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 EEDO75530 441 aaKnown RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ALDOAP04075 364 aaKnown RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 CD2P06729 351 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 EPHA3P29320 983 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 SSR2P43308 183 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 FADDQ13158 208 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 RHEBQ15382 184 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 NPTX1Q15818 432 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 STEAP4Q687X5 459 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 LCTLQ6UWM7 567 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 NUP54Q7Z3B4 507 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 MARVELD2Q8N4S9 558 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 FAM46DQ8NEK8 389 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 TRAPPC12Q8WVT3 735 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 METTL2AQ96IZ6 378 aaKnown RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ZBTB45Q96K62 511 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 KLHL32Q96NJ5 620 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 GPR22Q99680 433 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 DUSP26Q9BV47 211 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 BHLHE41Q9C0J9 482 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 POLR2J2Q9GZM3 115 aaKnown RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 POLR2J3Q9H1A7 115 aaKnown RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 GPN2Q9H9Y4 310 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ZBTB26Q9HCK0 441 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 MYNNQ9NPC7 610 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 PPIEQ9UNP9 301 aaKnown RBP7.61□□□□□ -1.19
VPS13D-211ENST00000543710 A0A096LPI6 279 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 SOBPA7XYQ1 873 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 B4DGG1 531 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 M0R2N6 131 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 AGFG2O95081 481 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 HTR1EP28566 365 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 MPIP34949 423 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 TNFSF9P41273 254 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ACTR1BP42025 376 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 MAPK12P53778 367 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 OR2B6P58173 313 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 DSTNP60981 165 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 C2orf80Q0P641 193 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 CBX3Q13185 183 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 SH3PXD2AQ5TCZ1 1133 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 FSTL4Q6MZW2 842 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ZDHHC14Q8IZN3 488 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 ZADH2Q8N4Q0 377 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 IGSF21Q96ID5 467 aa7.61□□□□□ -1.19
VPS13D-211ENST00000543710 CRYBG1Q9Y4K1 1723 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 WASHC1A8K0Z3 465 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 WASH3PC4AMC7 463 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 ACOX3O15254 700 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 CLPXO76031 633 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 OR5F1O95221 314 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 MT-ND2P03891 347 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 MT-ND5P03915 603 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 CYBAP13498 195 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 IL12BP29460 328 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 NTSR1P30989 418 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 EIF4HQ15056 248 aaKnown RBP7.6□□□□□ -1.19
VPS13D-211ENST00000543710 ZDHHC24Q6UX98 284 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 WASH2PQ6VEQ5 465 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 SNX33Q8WV41 574 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 HS6ST2Q96MM7 605 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 NMUR2Q9GZQ4 415 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 SERINC1Q9NRX5 453 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 POU2F3Q9UKI9 436 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 RARRES3Q9UL19 164 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 POMPQ9Y244 141 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 LAMB1P07942 1786 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 HEPACAM2A8MVW5 462 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 KCNK1O00180 336 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 NME6O75414 186 aaPredicted RBP7.6□□□□□ -1.19
VPS13D-211ENST00000543710 PRAMEF1O95521 474 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 EPOP01588 193 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 MLLT3P42568 568 aaPredicted RBP7.6□□□□□ -1.19
VPS13D-211ENST00000543710 MAGEA8P43361 318 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 RFX3P48380 749 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 SLC5A3P53794 718 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 WDR5P61964 334 aaKnown RBP7.6□□□□□ -1.19
VPS13D-211ENST00000543710 INCA1Q0VD86 236 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 SGCBQ16585 318 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 ECM1Q16610 540 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 TIGD6Q17RP2 521 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 KIAA1211LQ6NV74 962 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 MSANTD2Q6P1R3 559 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 KLHDC10Q6PID8 442 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 IRF2BP1Q8IU81 584 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 LRTOMTQ8WZ04 291 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 NUS1Q96E22 293 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 ZNF570Q96NI8 536 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 C7orf50Q9BRJ6 194 aaKnown RBP7.6□□□□□ -1.19
VPS13D-211ENST00000543710 PDLIM7Q9NR12 457 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 HECAQ9UBI9 543 aaPredicted RBP7.6□□□□□ -1.19
VPS13D-211ENST00000543710 CPQQ9Y646 472 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 CAMTA1Q9Y6Y1 1673 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 LAMA4Q16363 1823 aa7.6□□□□□ -1.19
VPS13D-211ENST00000543710 ANXA2P2A6NMY6 339 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms