RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SLCO4C1Q6ZQN7 724 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 IKBIPQ70UQ0 350 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 GPR141Q7Z602 305 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 UBE2Q1Q7Z7E8 422 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 ZNF555Q8NEP9 628 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 OR9A1PQ8NGU1 263 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 MAGEE2Q8TD90 523 aaPredicted RBP9.54□□□□□ -0.88
SS18-205ENST00000542420 SNRNP27Q8WVK2 155 aaKnown RBP9.54□□□□□ -0.88
SS18-205ENST00000542420 CYGBQ8WWM9 190 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 ZSWIM3Q96MP5 696 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 DOK1Q99704 481 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 TRIM8Q9BZR9 551 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 RAD21L1Q9H4I0 556 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 IKZF5Q9H5V7 419 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 TM9SF3Q9HD45 589 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 ATAD3AQ9NVI7 634 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 MBD1Q9UIS9 605 aaPredicted RBP9.54□□□□□ -0.88
SS18-205ENST00000542420 USP22Q9UPT9 525 aa9.54□□□□□ -0.88
SS18-205ENST00000542420 CKAP5Q14008 2032 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 TRIM64BA6NI03 449 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 MAGEB17A8MXT2 336 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 FPGTO14772 594 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 SPINT1O43278 529 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 PI15O43692 258 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 TBX19O60806 448 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 SOD1P00441 154 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 CD22P20273 847 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 ITPKAP23677 461 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 TIA1P31483 386 aaKnown RBP eCLIP9.53□□□□□ -0.88
SS18-205ENST00000542420 RYKP34925 604 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 CTSCP53634 463 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 SEMG2Q02383 582 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 RBBP4Q09028 425 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 NAE1Q13564 534 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 CAMK1Q14012 370 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 TEAD4Q15561 434 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 VMACQ2NL98 169 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 CCDC92Q53HC0 331 aaPredicted RBP9.53□□□□□ -0.88
SS18-205ENST00000542420 C9orf64Q5T6V5 341 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 SHQ1Q6PI26 577 aaKnown RBP9.53□□□□□ -0.88
SS18-205ENST00000542420 LCTLQ6UWM7 567 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 THAP5Q7Z6K1 395 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 SLC30A8Q8IWU4 369 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 C8orf59Q8N0T1 100 aaPredicted RBP9.53□□□□□ -0.88
SS18-205ENST00000542420 ZNF786Q8N393 782 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 OR2L2Q8NH16 312 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 ZNF566Q969W8 418 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 ZNF764Q96H86 408 aaPredicted RBP9.53□□□□□ -0.88
SS18-205ENST00000542420 TSSK3Q96PN8 268 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 TMEM106CQ9BVX2 250 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 REXO4Q9GZR2 422 aaKnown RBP9.53□□□□□ -0.88
SS18-205ENST00000542420 TMEM245Q9H330 911 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 SGK2Q9HBY8 427 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 DZANK1Q9NVP4 752 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 TBCCD1Q9NVR7 557 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 GDE1Q9NZC3 331 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 DEC1Q9P2X7 70 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 CDH7Q9ULB5 785 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 OR2AG2A6NM03 316 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 E7EQ34 232 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 CLIC1O00299 241 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 PRKD3O94806 890 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 RPN2P04844 631 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 C1GALT1C1LP0DN25 315 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 ERGP11308 486 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 ADRB3P13945 408 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 COX7A2P14406 83 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 PORP16435 677 aaPredicted RBP9.53□□□□□ -0.88
SS18-205ENST00000542420 TACR1P25103 407 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 PTX3P26022 381 aaPredicted RBP9.53□□□□□ -0.88
SS18-205ENST00000542420 IRS1P35568 1242 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 GALK1P51570 392 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 BCL2A1Q16548 175 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 GAB4Q2WGN9 574 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 FAM46CQ5VWP2 391 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 TMEM53Q6P2H8 277 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 ZNF773Q6PK81 442 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 DHRS4L2Q6PKH6 230 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 GCNT7Q6ZNI0 430 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 CBLL1Q75N03 491 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 EIF3MQ7L2H7 374 aaKnown RBP9.53□□□□□ -0.88
SS18-205ENST00000542420 LRRC56Q8IYG6 542 aaPredicted RBP9.53□□□□□ -0.88
SS18-205ENST00000542420 ZZZ3Q8IYH5 903 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 CLEC4FQ8N1N0 589 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 OXR1Q8N573 874 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 OR7G3Q8NG95 312 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 FBLIM1Q8WUP2 373 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 SMARCD2Q92925 531 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 BADQ92934 168 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 ABTB1Q969K4 478 aaPredicted RBP9.53□□□□□ -0.88
SS18-205ENST00000542420 NMD3Q96D46 503 aaKnown RBP9.53□□□□□ -0.88
SS18-205ENST00000542420 MTFMTQ96DP5 389 aaKnown RBP9.53□□□□□ -0.88
SS18-205ENST00000542420 COX14Q96I36 57 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 DUSP26Q9BV47 211 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 PCBD2Q9H0N5 130 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 ATG10Q9H0Y0 220 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 NT5DC2Q9H857 520 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 SFXN1Q9H9B4 322 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 IL1RAPQ9NPH3 570 aa9.53□□□□□ -0.88
SS18-205ENST00000542420 DYRK4Q9NR20 520 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms