RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 EFHD2Q96C19 240 aaPredicted RBP13.69□□□□□ -0.22
USP3-204ENST00000540797 PGAP3Q96FM1 320 aaPredicted RBP13.69□□□□□ -0.22
USP3-204ENST00000540797 TGM7Q96PF1 710 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 NELL2Q99435 816 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 CLSTN3Q9BQT9 956 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 CHID1Q9BWS9 393 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 NEUROD4Q9HD90 331 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 ITGBL1O95965 494 aaPredicted RBP13.69□□□□□ -0.22
USP3-204ENST00000540797 EEFSECP57772 596 aaKnown RBP13.69□□□□□ -0.22
USP3-204ENST00000540797 HNRNPKP61978 463 aaKnown RBP eCLIP13.69□□□□□ -0.22
USP3-204ENST00000540797 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.69□□□□□ -0.22
USP3-204ENST00000540797 MZT2BQ6NZ67 158 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 FRRS1Q6ZNA5 592 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 P4HA3Q7Z4N8 544 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 UBASH3BQ8TF42 649 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 C10orf82Q8WW14 230 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 LRRC58Q96CX6 371 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 RNF31Q96EP0 1072 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 SDHAF3Q9NRP4 125 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 KLHL33A6NCF5 533 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 GRXCR1A8MXD5 290 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 PSMD11O00231 422 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 BTN3A3O00478 584 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 CASKO14936 926 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 RGS10O43665 173 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 PRAMEF12O95522 483 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 BCHEP06276 602 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 HRH2P25021 359 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 AGTR2P50052 363 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 LACTB2Q53H82 288 aaPredicted RBP13.68□□□□□ -0.22
USP3-204ENST00000540797 LCN1P1Q5VSP4 162 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 PSAPL1Q6NUJ1 521 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 OR5M3Q8NGP4 307 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 FGF13Q92913 245 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 TP53INP1Q96A56 240 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 OR51V1Q9H2C8 321 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 KAT6AQ92794 2004 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 LILRB3O75022 631 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 GGT5P36269 586 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 KBTBD2Q8IY47 623 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 KCNA7Q96RP8 456 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 ARHGAP9Q9BRR9 750 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 METTL7AQ9H8H3 244 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 SCML1Q9UN30 329 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 DLGAP4Q9Y2H0 992 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 FAM92AA1XBS5 289 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 TSC22D2O75157 780 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 EDN1P05305 212 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 SYPP08247 313 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 G6PDP11413 515 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 SPINT3P49223 89 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 SLC18A1P54219 525 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 KLHDC10Q6PID8 442 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 B3GNT6Q6ZMB0 384 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 RTL10Q7L3V2 364 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 C12orf40Q86WS4 652 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 OR8D2Q9GZM6 311 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 PLGRKTQ9HBL7 147 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 PDE7BQ9NP56 450 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 RHBDL2Q9NX52 303 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 NHSL1Q5SYE7 1610 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.68□□□□□ -0.22
USP3-204ENST00000540797 HMGCLP35914 325 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 SRP54P61011 504 aaKnown RBP13.68□□□□□ -0.22
USP3-204ENST00000540797 UFM1P61960 85 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 LRRC26Q2I0M4 334 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 ZZZ3Q8IYH5 903 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 KLHDC9Q8NEP7 349 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 OR2AJ1Q8NGZ0 328 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 RPLP0P6Q8NHW5 317 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 PLEKHA1Q9HB21 404 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 SPATA2Q9UM82 520 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 MED31Q9Y3C7 131 aa13.68□□□□□ -0.22
USP3-204ENST00000540797 CAPN5O15484 640 aaPredicted RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 CCT3P49368 545 aaKnown RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 ID2Q02363 134 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 CCNIQ14094 377 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 PYDC2Q56P42 97 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 TMEM214Q6NUQ4 689 aaKnown RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 ASPGQ86U10 573 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 CADM1Q9BY67 442 aaKnown RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 FAM120CQ9NX05 1096 aaKnown RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 OR1A2Q9Y585 309 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 ZNF726A6NNF4 738 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 KHNYNO15037 678 aaKnown RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 ANGPTL1O95841 491 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 S1PR4O95977 384 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 RENP00797 406 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 THEGLP0DJG4 465 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 C1GALT1C1LP0DN25 315 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 DNASE1L1P49184 302 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 AFF1P51825 1210 aaKnown RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 SLC2A7Q6PXP3 512 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 SLC22A15Q8IZD6 547 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 ZNF483Q8TF39 744 aaPredicted RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 ACTL8Q9H568 366 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 HCSTQ9UBK5 93 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 DNAJB9Q9UBS3 223 aa13.67□□□□□ -0.22
USP3-204ENST00000540797 SETD1AO15047 1707 aaKnown RBP13.67□□□□□ -0.22
USP3-204ENST00000540797 ZNF860A6NHJ4 632 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 154.4 ms