RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 NPAS2Q99743 824 aa8.6□□□□□ -1.03
USP28-205ENST00000537706 AGPAT1Q99943 283 aa8.6□□□□□ -1.03
USP28-205ENST00000537706 VN1R1Q9GZP7 353 aa8.6□□□□□ -1.03
USP28-205ENST00000537706 LDAHQ9H6V9 325 aa8.6□□□□□ -1.03
USP28-205ENST00000537706 UBTD1Q9HAC8 227 aa8.6□□□□□ -1.03
USP28-205ENST00000537706 LPAR3Q9UBY5 353 aa8.6□□□□□ -1.03
USP28-205ENST00000537706 PLAGL1Q9UM63 463 aa8.6□□□□□ -1.03
USP28-205ENST00000537706 KIF2AO00139 706 aaPredicted RBP8.59□□□□□ -1.03
USP28-205ENST00000537706 KCNK1O00180 336 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 TXNDC9O14530 226 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 MAN1A2O60476 641 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 SRP72O76094 671 aaKnown RBP8.59□□□□□ -1.03
USP28-205ENST00000537706 NID1P14543 1247 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 ITGALP20701 1170 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 THBS2P35442 1172 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 MAN2A2P49641 1150 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 POLR2FP61218 127 aaKnown RBP8.59□□□□□ -1.03
USP28-205ENST00000537706 KRTAP1-1Q07627 177 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 PTK6Q13882 451 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 NR1I3Q14994 352 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 SYTL3Q4VX76 610 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 HSP90AA4PQ58FG1 418 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 NCBP2-AS2Q69YL0 99 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 RTL6Q6ICC9 239 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 PAPD4Q6PIY7 484 aaKnown RBP8.59□□□□□ -1.03
USP28-205ENST00000537706 ANKRD37Q7Z713 158 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 RELL2Q8NC24 303 aaPredicted RBP8.59□□□□□ -1.03
USP28-205ENST00000537706 ZMYND19Q96E35 227 aaPredicted RBP8.59□□□□□ -1.03
USP28-205ENST00000537706 C10orf90Q96M02 699 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 RAB11FIP5Q9BXF6 653 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 ZNF629Q9UEG4 869 aaPredicted RBP8.59□□□□□ -1.03
USP28-205ENST00000537706 LIMA1Q9UHB6 759 aaKnown RBP8.59□□□□□ -1.03
USP28-205ENST00000537706 SLC39A10Q9ULF5 831 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 DUSP10Q9Y6W6 482 aa8.59□□□□□ -1.03
USP28-205ENST00000537706 C2orf81A6NN90 581 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 AQP7O14520 342 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 SGTAO43765 313 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 MED26O95402 600 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 NDUFAF5Q5TEU4 345 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 LIPNQ5VXI9 398 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 C12orf54Q6X4T0 127 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 LANCL3Q6ZV70 420 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 TMEM156Q8N614 296 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 NAT14Q8WUY8 206 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 BEX2Q9BXY8 128 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 DRC3Q9H069 523 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 MRPL47Q9HD33 250 aaKnown RBP8.58□□□□□ -1.04
USP28-205ENST00000537706 STOX2Q9P2F5 926 aaPredicted RBP8.58□□□□□ -1.04
USP28-205ENST00000537706 FAM166BA8MTA8 275 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 F8W8V4 182 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 DYNC1I1O14576 645 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 BUD23O43709 281 aaKnown RBP8.58□□□□□ -1.04
USP28-205ENST00000537706 TMCC2O75069 709 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 PHF2O75151 1096 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 TUBB4AP04350 444 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 TNNT1P13805 278 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 CD9P21926 228 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 IL1R2P27930 398 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 MLF1P58340 268 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 PPIDQ08752 370 aaKnown RBP8.58□□□□□ -1.04
USP28-205ENST00000537706 KRT31Q15323 416 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 SF3B4Q15427 424 aaKnown RBP eCLIP8.58□□□□□ -1.04
USP28-205ENST00000537706 PRTGQ2VWP7 1150 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 PDLIM3Q53GG5 364 aaPredicted RBP8.58□□□□□ -1.04
USP28-205ENST00000537706 SFT2D3Q587I9 215 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 DNAJC21Q5F1R6 531 aaKnown RBP8.58□□□□□ -1.04
USP28-205ENST00000537706 ZNF468Q5VIY5 522 aaPredicted RBP8.58□□□□□ -1.04
USP28-205ENST00000537706 E4F1Q66K89 784 aaPredicted RBP8.58□□□□□ -1.04
USP28-205ENST00000537706 FRMPD2BQ6IN97 320 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 TTC23LQ6PF05 361 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 RNF44Q7L0R7 432 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 TAX1BP1Q86VP1 789 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 TMEM139Q8IV31 216 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 MAP7D3Q8IWC1 876 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 CYP4Z2PQ8N1L4 340 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 FBXW8Q8N3Y1 598 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 SLC25A41Q8N5S1 370 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 CSNK1A1LQ8N752 337 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 AMER3Q8N944 861 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 OR2L8Q8NGY9 312 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 SGMS2Q8NHU3 365 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 RERGQ96A58 199 aaPredicted RBP8.58□□□□□ -1.04
USP28-205ENST00000537706 CXorf56Q9H5V9 222 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 UTP6Q9NYH9 597 aaKnown RBP8.58□□□□□ -1.04
USP28-205ENST00000537706 NDRG3Q9UGV2 375 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 FAM153AQ9UHL3 310 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 ZNF281Q9Y2X9 895 aa8.58□□□□□ -1.04
USP28-205ENST00000537706 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.58□□□□□ -1.04
USP28-205ENST00000537706 LOC105369274A0A096LPK9 316 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 LOC102723532A0A0G2JNH3 316 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 SH3D21A4FU49 640 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 LRRC10BA6NIK2 292 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 GAPDHSO14556 408 aaPredicted RBP8.57□□□□□ -1.04
USP28-205ENST00000537706 CTSVO60911 334 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 AP2A2O94973 939 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 IL2RAP01589 272 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 EEF1GP26641 437 aaKnown RBP8.57□□□□□ -1.04
USP28-205ENST00000537706 SSR1P43307 286 aaKnown RBP8.57□□□□□ -1.04
USP28-205ENST00000537706 GPR85P60893 370 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 ZBTB17Q13105 803 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms