RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 APOBEC3GQ9HC16 384 aaKnown RBP10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 KRT84Q9NSB2 600 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 LINC01387J3KSC0 135 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 KHNYNO15037 678 aaKnown RBP10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 ZNF623O75123 536 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 C4BPAP04003 597 aaKnown RBP10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 FABP1P07148 127 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 HLA-EP13747 358 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 CYP2F1P24903 491 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 CD6P30203 668 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 EXOSC2Q13868 293 aaKnown RBP10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 LTB4RQ15722 352 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 BAK1Q16611 211 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 PYCR3Q53H96 274 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 TFAP2EQ6VUC0 442 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 C15orf39Q6ZRI6 1047 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 LARP4Q71RC2 724 aaKnown RBP eCLIP10.57□□□□□ -0.722e-7■■■□□ 16.6
CLSTN3-207ENST00000537408 SLC26A9Q7LBE3 791 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 SLC41A1Q8IVJ1 513 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 CHPFQ8IZ52 775 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 ATG16L2Q8NAA4 619 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 C3orf58Q8NDZ4 430 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 UBA3Q8TBC4 463 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 ZNF675Q8TD23 568 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 GPR151Q8TDV0 419 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 LRRN4Q8WUT4 740 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 CRELD1Q96HD1 420 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 LMAN2LQ9H0V9 348 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 AKTIPQ9H8T0 292 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 GPATCH2LQ9NWQ4 482 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 TBX21Q9UL17 535 aa10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 MYH9P35579 1960 aaKnown RBP10.57□□□□□ -0.72
CLSTN3-207ENST00000537408 ZNFX1Q9P2E3 1918 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 SLC12A8A0AV02 714 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 C9JVG2 144 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 DHX15O43143 795 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 FZD6O60353 706 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 IPO13O94829 963 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 GLUD1P00367 558 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 HRH2P25021 359 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 IKZF1Q13422 519 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 LRFN4Q6PJG9 635 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 RTL4Q6ZR62 310 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 SPATA2LQ8IUW3 424 aaPredicted RBP10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 TMEM192Q8IY95 271 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 TTC29Q8NA56 475 aaPredicted RBP10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 FBLIM1Q8WUP2 373 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 GSX2Q9BZM3 304 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 ASB7Q9H672 318 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 FOLH1BQ9HBA9 442 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 RASSF1Q9NS23 344 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 WRAP73Q9P2S5 460 aaPredicted RBP10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 KIF25Q9UIL4 384 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 A0A1B0GW55 424 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 SGCEO43556 437 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 GRAP2O75791 330 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 ENDOD1O94919 500 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 F9P00740 461 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 FCER2P06734 321 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 DUX4L2P0CJ85 424 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 DUX4L3P0CJ86 424 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 DUX4L4P0CJ87 422 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 DUX4L5P0CJ88 424 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 DUX4L6P0CJ89 424 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 DUX4L7P0CJ90 424 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 PRKACGP22612 351 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 KCNC1P48547 511 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 ZNF81P51508 661 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 RABGGTBP53611 331 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 OR4D2P58180 307 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 SMAD3P84022 425 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 CSTF1Q05048 431 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 ABRQ12979 859 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 BSNDQ8WZ55 320 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 ATOH1Q92858 354 aaPredicted RBP10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 TCEAL3Q969E4 200 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 DIRAS2Q96HU8 199 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 TMEM74Q96NL1 305 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 NPAS1Q99742 590 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 SRRQ9GZT4 340 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 CISHQ9NSE2 258 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 SDHAF2Q9NX18 166 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 LYARQ9NX58 379 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 DUX4Q9UBX2 424 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 PTPRFP10586 1907 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 CASTOR2A6NHX0 329 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 LACTBL1A8MY62 500 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 FABP7O15540 132 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 B4GALT5O43286 388 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 SNAPINO95295 136 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 C22orf31O95567 290 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 ZNF806P0C7X5 589 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 EFNA1P20827 205 aaPredicted RBP10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 GPC1P35052 558 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 CDKL4Q5MAI5 379 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 BLOC1S3Q6QNY0 202 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 FAM183BPQ6ZVS7 135 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 LRRTM3Q86VH5 581 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 HS3ST5Q8IZT8 346 aa10.56□□□□□ -0.72
CLSTN3-207ENST00000537408 EFHBQ8N7U6 833 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms