RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 CTBSQ01459 385 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 UGT8Q16880 541 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 SFT2D3Q587I9 215 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 GALNT18Q6P9A2 607 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 PDSS2Q86YH6 399 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 CANT1Q8WVQ1 401 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 GFM2Q969S9 779 aaKnown RBP19.93■□□□□ 0.78
VPS28-209ENST00000528142 UBE2E3Q969T4 207 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 SLC6A13Q9NSD5 602 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 EBF1Q9UH73 591 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 TAC3Q9UHF0 121 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 CA5BQ9Y2D0 317 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 PCDHB3Q9Y5E6 796 aa19.93■□□□□ 0.78
VPS28-209ENST00000528142 A0A096LPI6 279 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 FPGTO14772 594 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 SRFP11831 508 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 PTPN6P29350 595 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 HNRNPFP52597 415 aaKnown RBP19.92■□□□□ 0.78
VPS28-209ENST00000528142 OR4D2P58180 307 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 NFATC4Q14934 902 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 DPY19L1Q2PZI1 675 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 PGS1Q32NB8 556 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 UAP1L1Q3KQV9 507 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 GTDC1Q4AE62 458 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 TMEM31Q5JXX7 168 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 VN1R5Q7Z5H4 357 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 C17orf64Q86WR6 236 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 LINC01555Q8NAE3 123 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 ITCHQ96J02 903 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 ZNF583Q96ND8 569 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 CAMK1GQ96NX5 476 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 ACAT2Q9BWD1 397 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 PCBD2Q9H0N5 130 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 IKZF5Q9H5V7 419 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 RMND5AQ9H871 391 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 PELI2Q9HAT8 420 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 WASH6PQ9NQA3 447 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 CCM2LQ9NUG4 571 aaPredicted RBP19.92■□□□□ 0.78
VPS28-209ENST00000528142 ARMC1Q9NVT9 282 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 TCRBV5S2A0A599 114 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 LRRC72A6NJI9 287 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 H0Y8X5 98 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 AKAP10O43572 662 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 B3GALT4O96024 378 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 MTHFD1P11586 935 aaKnown RBP19.92■□□□□ 0.78
VPS28-209ENST00000528142 HNRNPA2B1P22626 353 aaKnown RBP19.92■□□□□ 0.78
VPS28-209ENST00000528142 HRH2P25021 359 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 TIA1P31483 386 aaKnown RBP eCLIP19.92■□□□□ 0.78
VPS28-209ENST00000528142 KIR3DL1P43629 444 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 SRSF11Q05519 484 aaKnown RBP19.92■□□□□ 0.78
VPS28-209ENST00000528142 TPRG1LQ5T0D9 272 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 TMIGD1Q6UXZ0 262 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 ARMCX6Q7L4S7 300 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 GPR180Q86V85 440 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 TICAM1Q8IUC6 712 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 ABHD11Q8NFV4 315 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 OR7A2PQ8NGA2 310 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 OR1E3Q8WZA6 343 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 OR2M4Q96R27 311 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 INPP5KQ9BT40 448 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 CARS2Q9HA77 564 aaKnown RBP19.92■□□□□ 0.78
VPS28-209ENST00000528142 IMP3Q9NV31 184 aaKnown RBP19.92■□□□□ 0.78
VPS28-209ENST00000528142 USP36Q9P275 1121 aaKnown RBP19.92■□□□□ 0.78
VPS28-209ENST00000528142 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.92■□□□□ 0.78
VPS28-209ENST00000528142 LRCH1Q9Y2L9 728 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 PCDHB14Q9Y5E9 798 aa19.92■□□□□ 0.78
VPS28-209ENST00000528142 SCN2BO60939 215 aa19.91■□□□□ 0.78
VPS28-209ENST00000528142 TGFB1P01137 390 aa19.91■□□□□ 0.78
VPS28-209ENST00000528142 ANXA4P09525 319 aaPredicted RBP19.91■□□□□ 0.78
VPS28-209ENST00000528142 NCK1P16333 377 aa19.91■□□□□ 0.78
VPS28-209ENST00000528142 WNT3P56703 355 aa19.91■□□□□ 0.78
VPS28-209ENST00000528142 CYP4F3Q08477 520 aa19.91■□□□□ 0.78
VPS28-209ENST00000528142 OR4F3Q6IEY1 312 aa19.91■□□□□ 0.78
VPS28-209ENST00000528142 DNAJC14Q6Y2X3 702 aaPredicted RBP19.91■□□□□ 0.78
VPS28-209ENST00000528142 PROSER1Q86XN7 944 aa19.91■□□□□ 0.78
VPS28-209ENST00000528142 KRT78Q8N1N4 520 aa19.91■□□□□ 0.78
VPS28-209ENST00000528142 ADCY4Q8NFM4 1077 aa19.91■□□□□ 0.78
VPS28-209ENST00000528142 GPR156Q8NFN8 814 aa19.91■□□□□ 0.78
VPS28-209ENST00000528142 HMGB4Q8WW32 186 aa19.91■□□□□ 0.78
VPS28-209ENST00000528142 SH3GL1Q99961 368 aa19.91■□□□□ 0.78
VPS28-209ENST00000528142 PIF1Q9H611 641 aa19.91■□□□□ 0.78
VPS28-209ENST00000528142 PRDM8Q9NQV8 689 aa19.91■□□□□ 0.78
VPS28-209ENST00000528142 NDRG2Q9UN36 371 aaKnown RBP19.91■□□□□ 0.78
VPS28-209ENST00000528142 SCAMP1O15126 338 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 APBB3O95704 486 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 ASMTP46597 345 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 AASDHQ4L235 1098 aaPredicted RBP19.9■□□□□ 0.78
VPS28-209ENST00000528142 ENPP7Q6UWV6 458 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 Q6ZS52 159 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 ANKRD46Q86W74 232 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 ADGRG5Q8IZF4 528 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 OR8J2Q8NGG1 315 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 SH3KBP1Q96B97 665 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 REXO4Q9GZR2 422 aaKnown RBP19.9■□□□□ 0.78
VPS28-209ENST00000528142 OR51B5Q9H339 312 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 RPF2Q9H7B2 306 aaKnown RBP19.9■□□□□ 0.78
VPS28-209ENST00000528142 MVB12BQ9H7P6 319 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 CUEDC1Q9NWM3 386 aaPredicted RBP19.9■□□□□ 0.78
VPS28-209ENST00000528142 DHRS12A0PJE2 317 aa19.9■□□□□ 0.78
VPS28-209ENST00000528142 OR52A4PA6NMU1 304 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms