RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 ZCCHC4Q9H5U6 513 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 POPDC2Q9HBU9 364 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 SMURF1Q9HCE7 757 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 ACOT13Q9NPJ3 140 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 NIT2Q9NQR4 276 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 PRMT8Q9NR22 394 aaPredicted RBP5.65□□□□□ -1.5
CD44-225ENST00000527326 CHRAC1Q9NRG0 131 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 LATS2Q9NRM7 1088 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 SPATA6Q9NWH7 488 aaPredicted RBP5.65□□□□□ -1.5
CD44-225ENST00000527326 C14orf119Q9NWQ9 140 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 SPHK1Q9NYA1 384 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 PPP4R1LQ9P1A2 415 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 HECAQ9UBI9 543 aaPredicted RBP5.65□□□□□ -1.5
CD44-225ENST00000527326 MIOXQ9UGB7 285 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 C3orf18Q9UK00 162 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 MGAT4AQ9UM21 535 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 RNF6Q9Y252 685 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 ORC6Q9Y5N6 252 aa5.65□□□□□ -1.5
CD44-225ENST00000527326 FRMPD2Q68DX3 1309 aaPredicted RBP5.65□□□□□ -1.51
CD44-225ENST00000527326 ADAMTS7Q9UKP4 1686 aa5.65□□□□□ -1.51
CD44-225ENST00000527326 ARAP2Q8WZ64 1704 aa5.65□□□□□ -1.51
CD44-225ENST00000527326 A0A0B4J293 547 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 A0A1B0GVI7 797 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 A0A1W2PQ09 198 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 TCRBV5S2A0A599 114 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 FAM221BA6H8Z2 402 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 A8MVJ9 347 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 CXorf49A8MYA2 514 aaPredicted RBP5.64□□□□□ -1.51
CD44-225ENST00000527326 PTGES3LE9PB15 166 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 RTCAO00442 366 aaKnown RBP5.64□□□□□ -1.51
CD44-225ENST00000527326 NEMP1O14524 444 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 SCAMP1O15126 338 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 ARPC2O15144 300 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 SLC16A6O15403 523 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 GRID2O43424 1007 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 CA12O43570 354 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 PCDHGA12O60330 932 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 TPST1O60507 370 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 RAD1O60671 282 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 PGLSO95336 258 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 MT-ND2P03891 347 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 AMHP03971 560 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 RLN2P04090 185 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 ZNF8P17098 575 aaPredicted RBP5.64□□□□□ -1.51
CD44-225ENST00000527326 DDX6P26196 483 aaKnown RBP eCLIP5.64□□□□□ -1.51
CD44-225ENST00000527326 LAP3P28838 519 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 HOXC9P31274 260 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 ARRB2P32121 409 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 ETV5P41161 510 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 MAGEA6P43360 314 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 MASP1P48740 699 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 NR0B1P51843 470 aaKnown RBP5.64□□□□□ -1.51
CD44-225ENST00000527326 NAPAP54920 295 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 SLC12A3P55017 1021 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 CDH4P55283 916 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 TAS2R40P59535 323 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 ISL1P61371 349 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 BTG1P62324 171 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 SLC35A2P78381 396 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 FPGSQ05932 587 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 GABPAQ06546 454 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 PIGFQ07326 219 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 DMP1Q13316 513 aaPredicted RBP5.64□□□□□ -1.51
CD44-225ENST00000527326 CDK5R2Q13319 367 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 RAPSNQ13702 412 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 BAATQ14032 418 aaPredicted RBP5.64□□□□□ -1.51
CD44-225ENST00000527326 DPYSL3Q14195 570 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 VEPH1Q14D04 833 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 LARS2Q15031 903 aaKnown RBP5.64□□□□□ -1.51
CD44-225ENST00000527326 CYP51A1Q16850 503 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 ZNF528Q3MIS6 628 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 CDNFQ49AH0 187 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 CBWD6Q4V339 395 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 FBXO48Q5FWF7 155 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 COQ5Q5HYK3 327 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 CBWD3Q5JTY5 395 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 C1orf141Q5JVX7 400 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 CBWD5Q5RIA9 395 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 THEM4Q5T1C6 240 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 TREML2Q5T2D2 321 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 LCN1P1Q5VSP4 162 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 FAM171A1Q5VUB5 890 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 PEAR1Q5VY43 1037 aaPredicted RBP5.64□□□□□ -1.51
CD44-225ENST00000527326 ANKRD34AQ69YU3 496 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 SCYL2Q6P3W7 929 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 CASC4Q6P4E1 433 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 TMPRSS11AQ6ZMR5 421 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 EIF3MQ7L2H7 374 aaKnown RBP5.64□□□□□ -1.51
CD44-225ENST00000527326 SLC46A3Q7Z3Q1 461 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 ZER1Q7Z7L7 766 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 PTRH1Q86Y79 214 aaKnown RBP5.64□□□□□ -1.51
CD44-225ENST00000527326 PSTKQ8IV42 348 aaKnown RBP5.64□□□□□ -1.51
CD44-225ENST00000527326 TRIM48Q8IWZ4 208 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 STPG2Q8N412 459 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 LNX2Q8N448 690 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 ATPAF2Q8N5M1 289 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 DUSP18Q8NEJ0 188 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 ZNF461Q8TAF7 563 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 TBCKQ8TEA7 893 aa5.64□□□□□ -1.51
CD44-225ENST00000527326 SHC3Q92529 594 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms