RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ZCCHC23Q6ZST2 131 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 RNF44Q7L0R7 432 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 NUDCD3Q8IVD9 361 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 OR4N4Q8N0Y3 316 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 BMPERQ8N8U9 685 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 OR52B6Q8NGF0 335 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 OR1L3Q8NH93 324 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 PPP1R14CQ8TAE6 165 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 MDM1Q8TC05 714 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 SREK1Q8WXA9 508 aaKnown RBP11.4□□□□□ -0.58
CUX1-210ENST00000497815 PMEPA1Q969W9 287 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 ZNF501Q96CX3 271 aaPredicted RBP11.4□□□□□ -0.58
CUX1-210ENST00000497815 PRR11Q96HE9 360 aaPredicted RBP11.4□□□□□ -0.58
CUX1-210ENST00000497815 MS4A3Q96HJ5 214 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 AIF1LQ9BQI0 150 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 C1QTNF3Q9BXJ4 246 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 SPRTNQ9H040 489 aaPredicted RBP11.4□□□□□ -0.58
CUX1-210ENST00000497815 GSTO2Q9H4Y5 243 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 SYNPO2LQ9H987 977 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 FANCEQ9HB96 536 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 ZBTB26Q9HCK0 441 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 STARD5Q9NSY2 213 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 GEMIN8Q9NWZ8 242 aaKnown RBP11.4□□□□□ -0.58
CUX1-210ENST00000497815 PILRAQ9UKJ1 303 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 PLCL2Q9UPR0 1127 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 A0A1B0GTL3 188 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 B4E171 279 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 POLR1CO15160 346 aaPredicted RBP11.39□□□□□ -0.59
CUX1-210ENST00000497815 LCMT2O60294 686 aaKnown RBP11.39□□□□□ -0.59
CUX1-210ENST00000497815 TNFSF15O95150 251 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 SERPIND1P05546 499 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 ADRB1P08588 477 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 CD22P20273 847 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 TSPAN7P41732 249 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 GABRA4P48169 554 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 WDR4P57081 412 aaKnown RBP11.39□□□□□ -0.59
CUX1-210ENST00000497815 RPS15AP62244 130 aaKnown RBP11.39□□□□□ -0.59
CUX1-210ENST00000497815 CYP4F2P78329 520 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 REEP5Q00765 189 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 ASPHQ12797 758 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 FAM219BQ5XKK7 198 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 TBC1D19Q8N5T2 526 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 OR4K1Q8NGD4 311 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 USP7Q93009 1102 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 RERGQ96A58 199 aaPredicted RBP11.39□□□□□ -0.59
CUX1-210ENST00000497815 PTCD3Q96EY7 689 aaKnown RBP11.39□□□□□ -0.59
CUX1-210ENST00000497815 MACROD1Q9BQ69 325 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 EFCAB11Q9BUY7 163 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 GATA5Q9BWX5 397 aaPredicted RBP11.39□□□□□ -0.59
CUX1-210ENST00000497815 SHCBP1LQ9BZQ2 653 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 POLR1BQ9H9Y6 1135 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 RARRES3Q9UL19 164 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 WASF3Q9UPY6 502 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 RNF11Q9Y3C5 154 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 AK5Q9Y6K8 562 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 UNC13CQ8NB66 2214 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 ANKRD12Q6UB98 2062 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 ADAMTS20P59510 1910 aa11.39□□□□□ -0.59
CUX1-210ENST00000497815 TRBC2A0A5B9 178 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 TRABD2BA6NFA1 517 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 H0YGG7 62 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 BIRC5O15392 142 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 OR2B3O76000 313 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 OR4F21O95013 312 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 TIAF1O95411 115 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 CLDN9O95484 217 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 OTCP00480 354 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 DHRS4L1P0CG22 281 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 PCNAP12004 261 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 BGNP21810 368 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 CXCR2P25025 360 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 RBMS1P29558 406 aaKnown RBP11.38□□□□□ -0.59
CUX1-210ENST00000497815 SLC18A1P54219 525 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 ITGA1P56199 1179 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 ERVPABLB-1P60509 514 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 ARF3P61204 181 aaPredicted RBP11.38□□□□□ -0.59
CUX1-210ENST00000497815 PPP2R2AP63151 447 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 LCP2Q13094 533 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 TRAF3Q13114 568 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 GPS2Q13227 327 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 CAMK2BQ13554 666 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 LAPTM5Q13571 262 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 IL11RAQ14626 422 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 CHI3L2Q15782 390 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 TBCCQ15814 346 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 CPSF6Q16630 551 aaKnown RBP eCLIP11.38□□□□□ -0.59
CUX1-210ENST00000497815 HIST2H2ACQ16777 129 aaPredicted RBP11.38□□□□□ -0.59
CUX1-210ENST00000497815 PAGE2BQ5JRK9 111 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 WASHC2DQ5SRD0 308 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 DCAF12Q5T6F0 453 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 PRAMEF17Q5VTA0 474 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 HIST2H2AA3Q6FI13 130 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 ADNP2Q6IQ32 1131 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 GRHL2Q6ISB3 625 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 CYB5D1Q6P9G0 228 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 TMIGD1Q6UXZ0 262 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 FRMD7Q6ZUT3 714 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 MILR1Q7Z6M3 343 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 SYVN1Q86TM6 617 aa11.38□□□□□ -0.59
CUX1-210ENST00000497815 PPP1R3BQ86XI6 285 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms