RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 CSNK1G2P78368 415 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 MAT1AQ00266 395 aaKnown RBP16.8■□□□□ 0.28
COL6A1-204ENST00000486023 SLC7A5Q01650 507 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 FRG1Q14331 258 aaKnown RBP16.8■□□□□ 0.28
COL6A1-204ENST00000486023 DUPD1Q68J44 220 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 C3orf62Q6ZUJ4 267 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 LAPTM4BQ86VI4 370 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 SLC26A11Q86WA9 606 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 CTAGE3PQ8IX95 158 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 SPATA6LQ8N4H0 392 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 CDKL2Q92772 493 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 C8orf44Q96CB5 159 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 EGFL8Q99944 293 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 MESP1Q9BRJ9 268 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 RAB17Q9H0T7 212 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 SLC26A1Q9H2B4 701 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 CAB39LQ9H9S4 337 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 GPAMQ9HCL2 828 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 MLXIPLQ9NP71 852 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 NSMCE4AQ9NXX6 385 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 GRHL1Q9NZI5 618 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 NXT1Q9UKK6 140 aaKnown RBP16.8■□□□□ 0.28
COL6A1-204ENST00000486023 MTO1Q9Y2Z2 717 aaKnown RBP16.8■□□□□ 0.28
COL6A1-204ENST00000486023 MRPS2Q9Y399 296 aaKnown RBP16.8■□□□□ 0.28
COL6A1-204ENST00000486023 HS3ST3B1Q9Y662 390 aa16.8■□□□□ 0.28
COL6A1-204ENST00000486023 VSTM2BA6NLU5 285 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 CXorf49A8MYA2 514 aaPredicted RBP16.79■□□□□ 0.28
COL6A1-204ENST00000486023 SOCS6O14544 535 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 LCMT2O60294 686 aaKnown RBP16.79■□□□□ 0.28
COL6A1-204ENST00000486023 DPM1O60762 260 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 ONECUT2O95948 504 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 NPPBP16860 134 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 HRH2P25021 359 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 GRK3P35626 688 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 AVPR1BP47901 424 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 RPS15AP62244 130 aaKnown RBP16.79■□□□□ 0.28
COL6A1-204ENST00000486023 NDUFA9Q16795 377 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 MFSD4BQ5TF39 518 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 IRAK1BP1Q5VVH5 260 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 KIRREL2Q6UWL6 708 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 CEP97Q8IW35 865 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 NKAPQ8N5F7 415 aaKnown RBP16.79■□□□□ 0.28
COL6A1-204ENST00000486023 OR9A4Q8NGU2 314 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 ZCCHC10Q8TBK6 192 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 VPS39Q96JC1 886 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 TSNARE1Q96NA8 513 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 DRC3Q9H069 523 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 SLAMF7Q9NQ25 335 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 SEMA3GQ9NS98 782 aa16.79■□□□□ 0.28
COL6A1-204ENST00000486023 PCSK5Q92824 1860 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 PRPF4O43172 522 aaKnown RBP eCLIP16.78■□□□□ 0.28
COL6A1-204ENST00000486023 OR1F1O43749 312 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 HEXBP07686 556 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 CCND1P24385 295 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 BCL6P41182 706 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 EMP2P54851 167 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 AP1S2P56377 157 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 DSG2Q14126 1118 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 CSHL1Q14406 222 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 USP10Q14694 798 aaKnown RBP16.78■□□□□ 0.28
COL6A1-204ENST00000486023 MYBPC3Q14896 1274 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 ZXDCQ2QGD7 858 aaPredicted RBP16.78■□□□□ 0.28
COL6A1-204ENST00000486023 TUBB8Q3ZCM7 444 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 GARNL3Q5VVW2 1013 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 LCTLQ6UWM7 567 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 FRA10AC1Q70Z53 315 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 EFCAB3Q8N7B9 438 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 ANKRD49Q8WVL7 239 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 ATL1Q8WXF7 558 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 HAUS8Q9BT25 410 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 SGPP1Q9BX95 441 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 RHOJQ9H4E5 214 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 ENAMQ9NRM1 1142 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 CTNNAL1Q9UBT7 734 aa16.78■□□□□ 0.28
COL6A1-204ENST00000486023 TNRC6AQ8NDV7 1962 aaKnown RBP16.77■□□□□ 0.28
COL6A1-204ENST00000486023 MYO18BQ8IUG5 2567 aa16.77■□□□□ 0.28
COL6A1-204ENST00000486023 TCRBV9S1A1TA0A576 114 aa16.77■□□□□ 0.28
COL6A1-204ENST00000486023 ESYT3A0FGR9 886 aa16.77■□□□□ 0.28
COL6A1-204ENST00000486023 NCF1BA6NI72 391 aaPredicted RBP16.77■□□□□ 0.28
COL6A1-204ENST00000486023 NCF1CA8MVU1 366 aaPredicted RBP16.77■□□□□ 0.28
COL6A1-204ENST00000486023 EIF3HO15372 352 aaKnown RBP eCLIP16.77■□□□□ 0.28
COL6A1-204ENST00000486023 FOXS1O43638 330 aa16.77■□□□□ 0.28
COL6A1-204ENST00000486023 ALPPP05187 535 aa16.77■□□□□ 0.28
COL6A1-204ENST00000486023 NCF1P14598 390 aaPredicted RBP16.77■□□□□ 0.28
COL6A1-204ENST00000486023 ZNF37AP17032 561 aaPredicted RBP16.77■□□□□ 0.28
COL6A1-204ENST00000486023 CXCR2P25025 360 aa16.77■□□□□ 0.28
COL6A1-204ENST00000486023 CCR8P51685 355 aa16.77■□□□□ 0.28
COL6A1-204ENST00000486023 EMP3P54852 163 aa16.77■□□□□ 0.28
COL6A1-204ENST00000486023 SNRPNP63162 240 aaKnown RBP16.77■□□□□ 0.28
COL6A1-204ENST00000486023 FOXK1P85037 733 aa16.77■□□□□ 0.28
COL6A1-204ENST00000486023 EEF1A2Q05639 463 aaKnown RBP16.77■□□□□ 0.28
COL6A1-204ENST00000486023 CKAP4Q07065 602 aaKnown RBP16.77■□□□□ 0.28
COL6A1-204ENST00000486023 AIMP2Q13155 320 aaKnown RBP16.77■□□□□ 0.28
COL6A1-204ENST00000486023 TSNQ15631 228 aaKnown RBP16.77■□□□□ 0.28
COL6A1-204ENST00000486023 CATSPEREQ5SY80 951 aa16.77■□□□□ 0.28
COL6A1-204ENST00000486023 VWA5B1Q5TIE3 1220 aa16.77■□□□□ 0.28
COL6A1-204ENST00000486023 JMJD6Q6NYC1 403 aaPredicted RBP16.77■□□□□ 0.28
COL6A1-204ENST00000486023 PRSS41Q7RTY9 318 aa16.77■□□□□ 0.28
COL6A1-204ENST00000486023 VN1R4Q7Z5H5 301 aa16.77■□□□□ 0.28
COL6A1-204ENST00000486023 ASPGQ86U10 573 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms