RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 TSFMP43897 325 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 MFAP5Q13361 173 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 ZNF169Q14929 603 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 PPP1R7Q15435 360 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 SYT16Q17RD7 645 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 THEMIS2Q5TEJ8 643 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 ISLR2Q6UXK2 745 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 MBOAT1Q6ZNC8 495 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 VN1R4Q7Z5H5 301 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 ZC3H7AQ8IWR0 971 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 DNAJB14Q8TBM8 379 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 EEF1AKMT1Q8WVE0 214 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 PSMF1Q92530 271 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 PRAP1Q96NZ9 151 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 EBNA1BP2Q99848 306 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 EPS8L2Q9H6S3 715 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 PLAC1Q9HBJ0 212 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 MKKSQ9NPJ1 570 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 CCDC177Q9NQR7 707 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 TRMT6Q9UJA5 497 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 PDE10AQ9Y233 779 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 CSMD1Q96PZ7 3565 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 SCN3AQ9NY46 2000 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 ABCA12Q86UK0 2595 aa17.84■□□□□ 0.45
CCDC88B-206ENST00000473405 DIDO1Q9BTC0 2240 aaKnown RBP17.83■□□□□ 0.45
CCDC88B-206ENST00000473405 ZGRF1Q86YA3 2104 aa17.83■□□□□ 0.45
CCDC88B-206ENST00000473405 IGHV1-45A0A0A0MS14 117 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 NSG1A0A0A6YYJ2 146 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 WIPF3A6NGB9 483 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 E2F3O00716 465 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 TXNDC9O14530 226 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 LDLRP01130 860 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 PRR35P0CG20 571 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 SOX11P35716 441 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 EMP2P54851 167 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 CDKN2DP55273 166 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 EEF1A2Q05639 463 aaKnown RBP17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 DHX9Q08211 1270 aaKnown RBP17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 PTK6Q13882 451 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 FAM53BQ14153 422 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 RBM20Q5T481 1227 aaKnown RBP17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 B3GNTL1Q67FW5 361 aaPredicted RBP17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 FAAH2Q6GMR7 532 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 LRRC8EQ6NSJ5 796 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 LINC00696Q6ZRV3 163 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 NDUFAF7Q7L592 441 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 PRSS41Q7RTY9 318 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 IGDCC3Q8IVU1 814 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 CNTN4Q8IWV2 1026 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 KBTBD2Q8IY47 623 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 SHISA5Q8N114 240 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 SLCO2A1Q92959 643 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 CNDP1Q96KN2 507 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 YIPF2Q9BWQ6 316 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 DDX47Q9H0S4 455 aaKnown RBP17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 TACC2O95359 2948 aa17.83■□□□□ 0.44
CCDC88B-206ENST00000473405 SCN2AQ99250 2005 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 A1L4Q6 167 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 DNALI1O14645 258 aaPredicted RBP17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 TSPAN12O95859 305 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 DDAH2O95865 285 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 CELA2AP08217 269 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 ANXA5P08758 320 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 MAT1AQ00266 395 aaKnown RBP17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 CDC16Q13042 620 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 TLR1Q15399 786 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 PHKG1Q16816 387 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 C4orf17Q53FE4 359 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 PAQR3Q6TCH7 311 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 AMER2Q8N7J2 671 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 ST6GALNAC3Q8NDV1 305 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 OR9A4Q8NGU2 314 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 BRIX1Q8TDN6 353 aaKnown RBP17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 LMF1Q96S06 567 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 KCNF1Q9H3M0 494 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 AGPAT4Q9NRZ5 378 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 TMEM184CQ9NVA4 438 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 SLC17A6Q9P2U8 582 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 ASIC3Q9UHC3 531 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 APCP25054 2843 aa17.82■□□□□ 0.44
CCDC88B-206ENST00000473405 DCHS2Q6V1P9 2916 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 KCNE1BA0A087WTH5 132 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 LOC102723996A0A087X1L8 192 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 TTC4O95801 387 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 SERPINA7P05543 415 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 C8GP07360 202 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 HEXBP07686 556 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 IVDP26440 423 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 RPS15AP62244 130 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 SP140Q13342 867 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 PCOLCEQ15113 449 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 ZXDCQ2QGD7 858 aaPredicted RBP17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 SPANXN3Q5MJ09 141 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 TMEM205Q6UW68 189 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 CATSPER1Q8NEC5 780 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 MCOLN3Q8TDD5 553 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 GRHL3Q8TE85 626 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 CCDC138Q96M89 665 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 MACROD1Q9BQ69 325 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 WDR83Q9BRX9 315 aaKnown RBP17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms